Detailed information of deep learning profile BP001046.1

  1. Home
  2. Deep Learning Profile > BP001046.1
This page shows detailed deep learning-derived predictions and motifs for NFIB in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NFIB
Model ID: BP001046.1
Cell line/tissue: MCF-7
Class: SMAD/NF-1 DNA-binding domain factors
Family: Nuclear factor 1
JASPAR ID: MA1643.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O00712  
Source: ENCSR702BYX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 0.02 0.00 0.00 0.00 ]
C [ 0.00 -0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 0.09 -0.00 0.01 0.00 0.00 -0.00 -0.00 0.13 0.14 0.00 -0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.15 0.13 -0.00 -0.00 0.00 0.00 0.01 -0.00 0.08 0.00 0.00 -0.00 0.02 0.00 -0.00 -0.00 ]
T [ 0.00 0.00 0.00 0.00 0.05 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 3607 3977 3694 3887 3550 3571 4318 3827 3450 3579 3633 3637 3861 3888 4023 4008 4532 2242 412 107 3 36 834 6571 2660 3970 3488 3832 172 80 4 12939 3918 3608 4307 3966 3059 3564 3263 3345 3399 3561 4020 3389 3518 3568 3493 3777 3936 3766 ]
C [ 3291 3738 3384 3465 3275 3950 3393 3335 3328 3395 3337 3706 3342 3173 2905 3351 2623 5838 3080 74 3 8 13833 2769 5067 3633 3809 936 393 14644 14838 1381 822 3197 3331 3883 4074 3300 3688 3678 3770 3663 4026 3637 3369 3355 3911 3605 3548 3790 ]
G [ 3916 3448 3730 3501 3901 3555 3621 3786 3433 4111 3754 3708 3961 4124 4598 3428 3262 2976 373 1032 14848 14800 130 662 3474 3841 5223 2838 11560 16 10 97 9101 5963 2838 3557 3359 3633 3889 4224 3611 3838 3393 3329 3688 4143 3668 3613 3349 3543 ]
T [ 4045 3696 4051 4006 4133 3783 3527 3911 4648 3774 4135 3808 3695 3674 3333 4072 4442 3803 10994 13646 5 15 62 4857 3658 3415 2339 7253 2734 119 7 442 1018 2091 4383 3453 4367 4362 4019 3612 4079 3797 3420 4504 4284 3793 3787 3864 4026 3760 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 -0.00 -0.03 -0.05 -0.06 -0.02 0.01 0.03 -0.00 -0.00 0.01 0.01 -0.05 -0.03 -0.06 0.08 0.06 0.02 0.01 0.01 0.01 ]
C [ 0.00 0.00 -0.01 0.01 0.04 -0.02 -0.02 -0.06 0.10 0.01 0.03 0.03 0.03 0.01 -0.02 0.13 0.14 0.01 -0.04 0.01 0.00 0.01 0.01 ]
G [ 0.01 0.01 0.00 0.01 -0.04 0.01 0.15 0.13 -0.02 0.01 0.03 0.03 0.03 0.01 0.10 -0.06 -0.01 -0.02 0.03 0.01 -0.00 0.00 0.01 ]
T [ 0.01 0.01 0.01 0.02 0.06 0.08 -0.05 -0.04 -0.04 0.01 0.01 0.00 -0.01 0.03 0.01 -0.01 -0.06 -0.05 -0.03 -0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1050

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 716

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 565

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 481

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 476

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 390

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 283

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 204

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 22

CWM

PFM

     

HCWM

2 profiles found for the same TF (NFIB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001044.1 NFIB ENCSR414WBQ HepG2 Homo sapiens MA1643.2
BP001045.1 NFIB ENCSR582ZOA MCF-7 Homo sapiens MA1643.2
Showing 2 profiles of page 1 from 1 pages
  • 1 (current)