Detailed information of deep learning profile BP001045.1

This page shows detailed deep learning-derived predictions and motifs for NFIB in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NFIB
Model ID: BP001045.1
Cell line/tissue: MCF-7
Class: SMAD/NF-1 DNA-binding domain factors
Family: Nuclear factor 1
JASPAR ID: MA1643.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O00712  
Source: ENCSR582ZOA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 0.05 0.00 0.00 0.00 0.00 ]
C [ -0.00 -0.00 0.00 0.02 -0.00 -0.00 0.00 0.11 -0.00 0.01 0.00 0.00 -0.00 -0.00 0.15 0.15 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]
G [ -0.00 -0.00 -0.00 -0.00 -0.00 0.16 0.15 -0.00 -0.00 0.00 0.00 0.01 -0.00 0.11 0.00 0.00 -0.00 0.01 0.00 -0.00 -0.00 -0.00 ]
T [ 0.00 0.00 0.00 0.01 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

A [ 3563 3920 3730 3250 3243 3376 3916 3409 3230 3865 3433 3571 3634 3866 3288 4117 2047 942 146 3 32 716 7702 2229 3356 3052 4595 80 24 3 12117 9735 3263 4217 3694 3006 3586 3191 3454 3273 3385 4113 3318 3278 3441 3458 3843 3378 3483 3544 ]
C [ 2984 3094 3085 3516 3591 3492 3062 2971 3394 3378 3409 3329 3293 2711 3087 2421 4823 8702 40 4 0 12680 2067 4728 3291 2980 611 128 13398 13469 1233 396 2492 2731 3185 4091 3178 3469 3107 3576 3531 3094 3581 3134 3172 3716 3262 3553 3252 3496 ]
G [ 3608 3266 3098 3380 3136 3184 3313 3606 3627 2950 3445 3382 3099 4089 3302 3116 3119 775 429 13472 13433 61 524 3204 3020 4930 2791 11914 3 6 40 2844 5537 2435 2724 2507 3101 3190 3428 3088 3003 3016 2986 3083 3546 2935 2934 3032 2917 2953 ]
T [ 3325 3200 3567 3334 3510 3428 3189 3494 3229 3287 3193 3198 3454 2814 3803 3826 3491 3061 12865 1 15 23 3187 3319 3813 2518 5483 1358 55 2 90 505 2188 4097 3877 3876 3615 3630 3491 3543 3561 3257 3595 3985 3321 3371 3441 3517 3828 3487 ]

Hypothetical CWM

A [ 0.00 0.01 0.02 -0.00 -0.04 -0.07 -0.07 -0.01 0.00 0.04 -0.00 0.00 0.01 0.00 -0.04 -0.04 -0.06 0.10 0.07 0.02 0.02 0.01 0.01 ]
C [ 0.01 0.00 -0.01 0.01 0.04 -0.01 -0.00 -0.07 0.12 0.00 0.03 0.03 0.02 0.01 -0.02 0.15 0.15 0.01 -0.04 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 -0.04 0.01 0.16 0.15 -0.02 0.01 0.02 0.03 0.03 0.00 0.11 -0.07 -0.00 -0.01 0.04 0.01 -0.01 0.00 0.01 ]
T [ 0.01 0.01 0.02 0.02 0.07 0.10 -0.06 -0.04 -0.04 0.00 0.01 0.00 -0.00 0.04 0.00 -0.02 -0.07 -0.07 -0.04 -0.00 0.02 0.01 0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 624

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 535

2 profiles found for the same TF (NFIB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001044.1 NFIB ENCSR414WBQ HepG2 Homo sapiens MA1643.2
BP001046.1 NFIB ENCSR702BYX MCF-7 Homo sapiens MA1643.2
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