Detailed information of deep learning profile BP001046.1

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This page shows detailed deep learning-derived predictions and motifs for NFIB in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NFIB
Model ID: BP001046.1
Cell line/tissue: MCF-7
Class: SMAD/NF-1 DNA-binding domain factors
Family: Nuclear factor 1
JASPAR ID: MA1643.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O00712  
Source: ENCSR702BYX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 0.05 0.00 0.00 0.00 0.00 ]
C [ -0.00 -0.00 0.00 0.02 -0.00 0.00 0.00 0.08 -0.00 0.01 0.00 0.00 -0.00 -0.00 0.13 0.15 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.00 -0.00 0.00 0.14 0.13 -0.00 -0.00 0.00 0.00 0.01 -0.00 0.09 0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 0.00 ]
T [ 0.00 0.00 0.00 0.02 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 3760 4026 3864 3787 3793 4284 4504 3420 3797 4079 3612 4019 4362 4367 3453 4383 2091 1018 442 7 119 2734 7253 2339 3415 3658 4857 62 15 5 13646 10994 3803 4442 4072 3333 3674 3695 3808 4135 3774 4648 3911 3527 3783 4133 4006 4051 3696 4045 ]
C [ 3543 3349 3613 3668 4143 3688 3329 3393 3838 3611 4224 3889 3633 3359 3557 2838 5963 9101 97 10 16 11560 2838 5223 3841 3474 662 130 14800 14848 1032 373 2976 3262 3428 4598 4124 3961 3708 3754 4111 3433 3786 3621 3555 3901 3501 3730 3448 3916 ]
G [ 3790 3548 3605 3911 3355 3369 3637 4026 3663 3770 3678 3688 3300 4074 3883 3331 3197 822 1381 14838 14644 393 936 3809 3633 5067 2769 13833 8 3 74 3080 5838 2623 3351 2905 3173 3342 3706 3337 3395 3328 3335 3393 3950 3275 3465 3384 3738 3291 ]
T [ 3766 3936 3777 3493 3568 3518 3389 4020 3561 3399 3345 3263 3564 3059 3966 4307 3608 3918 12939 4 80 172 3832 3488 3970 2660 6571 834 36 3 107 412 2242 4532 4008 4023 3888 3861 3637 3633 3579 3450 3827 4318 3571 3550 3887 3694 3977 3607 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 -0.00 -0.03 -0.05 -0.06 -0.01 0.01 0.03 -0.01 0.00 0.01 0.01 -0.04 -0.04 -0.05 0.08 0.06 0.02 0.01 0.01 0.01 ]
C [ 0.01 0.00 -0.00 0.01 0.03 -0.02 -0.01 -0.06 0.10 0.01 0.03 0.03 0.03 0.01 -0.02 0.13 0.15 0.01 -0.04 0.01 0.00 0.01 0.01 ]
G [ 0.01 0.01 0.00 0.01 -0.04 0.01 0.14 0.13 -0.02 0.01 0.03 0.03 0.03 0.01 0.10 -0.06 -0.02 -0.02 0.04 0.01 -0.01 0.00 0.00 ]
T [ 0.01 0.01 0.01 0.02 0.06 0.08 -0.06 -0.03 -0.05 0.01 0.01 -0.00 -0.00 0.03 0.01 -0.02 -0.06 -0.05 -0.03 -0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1050

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 716

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 565

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 481

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 476

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 390

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 283

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 204

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 22

CWM

PFM

     

HCWM

2 profiles found for the same TF (NFIB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001044.1 NFIB ENCSR414WBQ HepG2 Homo sapiens MA1643.2
BP001045.1 NFIB ENCSR582ZOA MCF-7 Homo sapiens MA1643.2
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