Detailed information of deep learning profile BP001045.1

This page shows detailed deep learning-derived predictions and motifs for NFIB in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NFIB
Model ID: BP001045.1
Cell line/tissue: MCF-7
Class: SMAD/NF-1 DNA-binding domain factors
Family: Nuclear factor 1
JASPAR ID: MA1643.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O00712  
Source: ENCSR582ZOA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 0.01 0.00 0.00 0.00 ]
C [ -0.00 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.00 0.11 -0.00 0.01 0.00 0.00 -0.00 -0.00 0.15 0.16 -0.00 -0.00 -0.00 -0.00 -0.00 ]
G [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.15 0.15 -0.00 -0.00 0.00 0.00 0.01 -0.00 0.11 0.00 -0.00 -0.00 0.02 0.00 -0.00 -0.00 ]
T [ 0.00 0.00 0.00 0.00 0.05 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

A [ 3487 3828 3517 3441 3371 3321 3985 3595 3257 3561 3543 3491 3630 3615 3876 3877 4097 2188 505 90 2 55 1358 5483 2518 3813 3319 3187 23 15 1 12865 3061 3491 3826 3803 2814 3454 3198 3193 3287 3229 3494 3189 3428 3510 3334 3567 3200 3325 ]
C [ 2953 2917 3032 2934 2935 3546 3083 2986 3016 3003 3088 3428 3190 3101 2507 2724 2435 5537 2844 40 6 3 11914 2791 4930 3020 3204 524 61 13433 13472 429 775 3119 3116 3302 4089 3099 3382 3445 2950 3627 3606 3313 3184 3136 3380 3098 3266 3608 ]
G [ 3496 3252 3553 3262 3716 3172 3134 3581 3094 3531 3576 3107 3469 3178 4091 3185 2731 2492 396 1233 13469 13398 128 611 2980 3291 4728 2067 12680 0 4 40 8702 4823 2421 3087 2711 3293 3329 3409 3378 3394 2971 3062 3492 3591 3516 3085 3094 2984 ]
T [ 3544 3483 3378 3843 3458 3441 3278 3318 4113 3385 3273 3454 3191 3586 3006 3694 4217 3263 9735 12117 3 24 80 4595 3052 3356 2229 7702 716 32 3 146 942 2047 4117 3288 3866 3634 3571 3433 3865 3230 3409 3916 3376 3243 3250 3730 3920 3563 ]

Hypothetical CWM

A [ 0.00 0.01 0.02 -0.00 -0.04 -0.07 -0.07 -0.02 0.00 0.04 -0.00 0.00 0.01 0.00 -0.04 -0.04 -0.06 0.10 0.07 0.02 0.02 0.01 0.01 ]
C [ 0.01 0.00 -0.01 0.01 0.04 -0.01 -0.00 -0.07 0.11 0.00 0.03 0.03 0.02 0.01 -0.02 0.15 0.16 0.01 -0.04 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 -0.04 0.01 0.15 0.15 -0.02 0.01 0.02 0.03 0.03 0.00 0.12 -0.07 -0.00 -0.01 0.04 0.01 -0.01 0.00 0.01 ]
T [ 0.01 0.01 0.02 0.02 0.07 0.10 -0.06 -0.04 -0.04 0.00 0.01 0.00 -0.00 0.04 0.00 -0.01 -0.07 -0.07 -0.04 -0.00 0.02 0.01 0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 624

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 535

2 profiles found for the same TF (NFIB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001044.1 NFIB ENCSR414WBQ HepG2 Homo sapiens MA1643.2
BP001046.1 NFIB ENCSR702BYX MCF-7 Homo sapiens MA1643.2
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