Detailed information of deep learning profile BP000929.1

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This page shows detailed deep learning-derived predictions and motifs for NR2C1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2C1
Model ID: BP000929.1
Cell line/tissue: K562
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA1535.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P13056  
Source: ENCSR742IDN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.00 0.00 0.00 0.03 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
C [ 0.01 0.01 0.00 0.00 0.00 -0.00 0.00 0.03 0.02 0.00 0.00 -0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.00 0.03 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 0.00 0.03 0.00 0.00 -0.00 0.00 0.01 0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 983 929 980 977 970 1009 962 949 869 1005 981 976 980 1057 942 914 985 804 889 1072 921 826 865 507 793 0 41 4494 38 11 10 270 1013 888 1100 1003 993 862 880 960 863 960 920 850 946 990 944 970 957 953 ]
C [ 1298 1349 1338 1392 1357 1264 1339 1307 1429 1368 1370 1328 1408 1217 1313 1271 1244 1383 1359 1140 1350 1840 2046 1635 1356 97 6 19 4476 4436 1628 2314 674 1183 1258 1198 1384 1326 1453 1452 1467 1399 1453 1414 1276 1305 1363 1442 1360 1308 ]
G [ 1189 1204 1154 1140 1103 1139 1133 1203 1152 1145 1182 1196 1144 1195 1168 1342 1123 1220 1013 1405 1278 1056 716 848 1190 6 4465 1 1 53 24 369 1159 1643 1390 1177 1162 1140 1121 986 1118 1096 1094 1172 1217 1074 1200 1155 1077 1147 ]
T [ 1048 1036 1046 1009 1088 1106 1084 1059 1068 1000 985 1018 986 1049 1095 991 1166 1111 1257 901 969 796 891 1528 1179 4415 6 4 3 18 2856 1565 1672 804 770 1140 979 1190 1064 1120 1070 1063 1051 1082 1079 1149 1011 951 1124 1110 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.01 0.00 -0.03 0.00 0.03 0.01 -0.01 -0.02 -0.00 -0.00 0.00 0.01 ]
C [ 0.01 0.01 0.01 0.00 0.01 -0.01 0.00 0.03 0.03 0.01 0.01 0.00 0.00 0.00 ]
G [ -0.00 -0.00 0.00 0.00 -0.01 0.03 -0.01 -0.03 -0.00 -0.00 -0.00 0.00 0.01 0.00 ]
T [ -0.00 -0.00 0.01 0.01 0.03 -0.02 -0.02 -0.01 -0.01 0.02 0.00 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3706

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3387

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 559

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 420

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 157

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 137

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 92

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 80

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 75

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 61

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 33

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 29

CWM

PFM

     

HCWM

1 profiles found for the same TF (NR2C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000928.1 NR2C1 ENCSR178DEG K562 Homo sapiens MA1535.2
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