Detailed information of deep learning profile BP000928.1

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This page shows detailed deep learning-derived predictions and motifs for NR2C1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2C1
Model ID: BP000928.1
Cell line/tissue: K562
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA1535.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P13056  
Source: ENCSR178DEG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.00 0.01 -0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.00 0.02 0.02 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.02 0.00 0.00 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1853 2037 1823 1844 1770 1873 2070 2208 1786 1746 2004 1879 1952 1798 1862 1905 1874 2048 2029 1768 2397 1322 1507 2888 2839 5106 40 11 4 15 7699 1935 2417 1991 1574 1807 1923 1844 2222 2175 1821 2089 1955 1727 1985 1759 1701 1886 1835 1927 ]
C [ 1925 1886 1777 1903 2231 2099 1853 1855 1863 2137 1963 2006 1942 1732 1892 1818 1631 1896 1895 2098 1982 2384 2835 2049 616 20 39 1 8 7745 7 2040 1593 1405 1711 1859 1923 2095 1949 1851 2124 2000 2187 2162 2046 1916 2266 2138 1893 1895 ]
G [ 2393 2077 2352 2396 2040 2114 2298 2195 2465 2389 2086 2461 2410 2741 2408 2686 2616 2412 2021 2335 1946 2075 1832 1180 3941 2739 7763 7804 16 8 172 2536 2863 3023 3004 2437 2022 2295 2151 2088 2239 2192 2025 2218 2229 2329 2141 2234 2184 2417 ]
T [ 1708 1879 1927 1736 1838 1793 1658 1621 1765 1607 1826 1533 1575 1608 1717 1470 1758 1523 1934 1678 1554 2098 1705 1762 483 14 37 63 7851 111 1 1368 1006 1460 1590 1776 2011 1645 1557 1765 1695 1598 1712 1772 1619 1875 1771 1621 1967 1640 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.01 0.02 -0.01 -0.01 -0.01 -0.01 0.02 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.01 -0.01 -0.02 -0.01 0.02 -0.01 0.00 0.00 -0.00 -0.00 ]
G [ 0.00 0.00 -0.00 0.01 0.01 0.02 0.02 -0.00 -0.01 0.01 -0.00 0.00 0.01 0.01 ]
T [ 0.00 0.00 -0.00 -0.00 -0.02 -0.01 0.01 0.02 0.00 -0.02 0.00 -0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4802

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3906

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1614

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1460

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1369

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 891

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 248

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 196

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 168

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 108

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 92

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 92

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 74

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 69

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 41

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 28

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_19

Num. of seqlets: 21

CWM

PFM

     

HCWM

1 profiles found for the same TF (NR2C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000929.1 NR2C1 ENCSR742IDN K562 Homo sapiens MA1535.2
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