Detailed information of deep learning profile BP000929.1

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This page shows detailed deep learning-derived predictions and motifs for NR2C1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2C1
Model ID: BP000929.1
Cell line/tissue: K562
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA1535.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P13056  
Source: ENCSR742IDN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.00 0.01 0.00 -0.00 0.00 0.00 0.03 0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.03 0.00 0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.00 0.02 0.03 0.00 -0.00 0.00 0.00 0.00 0.01 0.01 ]
T [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.03 0.00 0.00 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1110 1124 951 1011 1149 1079 1082 1051 1063 1070 1120 1064 1190 979 1140 770 804 1672 1565 2856 18 3 4 6 4415 1179 1528 891 796 969 901 1257 1111 1166 991 1095 1049 986 1018 985 1000 1068 1059 1084 1106 1088 1009 1046 1036 1048 ]
C [ 1147 1077 1155 1200 1074 1217 1172 1094 1096 1118 986 1121 1140 1162 1177 1390 1643 1159 369 24 53 1 1 4465 6 1190 848 716 1056 1278 1405 1013 1220 1123 1342 1168 1195 1144 1196 1182 1145 1152 1203 1133 1139 1103 1140 1154 1204 1189 ]
G [ 1308 1360 1442 1363 1305 1276 1414 1453 1399 1467 1452 1453 1326 1384 1198 1258 1183 674 2314 1628 4436 4476 19 6 97 1356 1635 2046 1840 1350 1140 1359 1383 1244 1271 1313 1217 1408 1328 1370 1368 1429 1307 1339 1264 1357 1392 1338 1349 1298 ]
T [ 953 957 970 944 990 946 850 920 960 863 960 880 862 993 1003 1100 888 1013 270 10 11 38 4494 41 0 793 507 865 826 921 1072 889 804 985 914 942 1057 980 976 981 1005 869 949 962 1009 970 977 980 929 983 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.00 0.02 -0.01 -0.01 -0.02 -0.02 0.03 0.01 0.01 -0.00 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.03 -0.01 0.03 -0.01 0.00 0.00 -0.00 -0.00 ]
G [ 0.00 0.00 0.00 0.01 0.01 0.03 0.03 0.00 -0.01 0.01 0.00 0.01 0.01 0.01 ]
T [ 0.01 0.00 -0.00 -0.00 -0.02 -0.01 0.01 0.03 0.00 -0.03 0.00 -0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3706

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3387

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 559

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 420

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 157

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 137

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 92

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 80

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 75

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 61

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 33

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 29

CWM

PFM

     

HCWM

1 profiles found for the same TF (NR2C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000928.1 NR2C1 ENCSR178DEG K562 Homo sapiens MA1535.2
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