Detailed information of deep learning profile BP000729.1

  1. Home
  2. Deep Learning Profile > BP000729.1
This page shows detailed deep learning-derived predictions and motifs for GABPA in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000729.1
Cell line/tissue: HeLa-S3
Class: Tryptophan cluster factors
Family: Ets-related
JASPAR ID: MA0062.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR000BHS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.01 -0.00 -0.00 0.00 0.00 0.07 0.05 0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.03 0.06 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.10 0.08 0.00 0.00 0.02 -0.00 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 ]

Frequency matrix

       
A [ 1800 1832 1772 1639 1678 1744 1733 1755 1814 1756 1712 1726 1722 1619 1700 1676 1751 1660 1675 1611 1726 1387 1996 2342 2943 734 2024 0 14 8569 8027 1555 710 1724 2170 1608 1498 1433 1549 1645 1518 1600 1726 1629 1633 1669 1668 1656 1643 1546 ]
C [ 2716 2728 2622 2759 2694 2708 2642 2682 2745 2719 2714 2665 2581 2692 2809 2774 2897 2673 2593 2954 2909 2791 2565 2501 1968 6100 6522 1 19 52 211 983 2393 1694 2311 3055 2318 2760 2882 2641 2765 2773 2544 2732 2620 2589 2707 2740 2626 2634 ]
G [ 2735 2704 2779 2856 2906 2824 2864 2864 2783 2796 2862 2833 2841 2809 2670 2808 2632 2905 2983 2644 2601 3112 3032 2650 3053 1742 188 8746 8693 72 98 6047 1140 4035 3245 2395 3065 2793 2646 2730 2841 2967 2968 2886 3070 2994 2849 2819 2869 3006 ]
T [ 1505 1492 1583 1502 1478 1480 1517 1455 1414 1485 1468 1532 1612 1636 1577 1498 1476 1518 1505 1547 1520 1466 1163 1263 792 180 22 9 30 63 420 171 4513 1303 1030 1698 1875 1770 1679 1740 1632 1416 1518 1509 1433 1504 1532 1541 1618 1570 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.01 -0.00 -0.01 -0.06 -0.05 0.07 0.05 0.01 -0.02 0.01 0.01 -0.00 ]
C [ 0.01 0.01 0.01 -0.00 0.04 0.07 -0.02 -0.04 -0.03 -0.00 0.01 0.01 -0.01 0.00 0.01 ]
G [ 0.00 0.01 0.00 0.01 0.00 -0.02 0.10 0.08 -0.02 -0.05 0.03 -0.01 0.01 0.01 -0.00 ]
T [ -0.00 -0.01 -0.01 -0.02 -0.04 -0.07 -0.06 -0.02 -0.01 0.00 -0.04 0.03 -0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 343

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 305

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 33

CWM

PFM

     

HCWM

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000730.1 GABPA ENCSR000BIW H1 Homo sapiens MA0062.4
BP000731.1 GABPA ENCSR000BJK HepG2 Homo sapiens MA0062.4
BP000732.1 GABPA ENCSR000BLO K562 Homo sapiens MA0062.4
BP000733.1 GABPA ENCSR000BPY A549 Homo sapiens MA0062.4
BP000734.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens MA0062.4
BP000735.1 GABPA ENCSR000BTK HL-60 Homo sapiens MA0062.4
BP000736.1 GABPA ENCSR000BUK MCF-7 Homo sapiens MA0062.4
BP000737.1 GABPA ENCSR038GMB liver Homo sapiens MA0062.4
BP000738.1 GABPA ENCSR038RXU MCF-7 Homo sapiens MA0062.4
BP000739.1 GABPA ENCSR269TNX HepG2 Homo sapiens MA0062.4
Showing 10 profiles of page 1 from 2 pages