Detailed information of deep learning profile BP000727.1

  1. Home
  2. Deep Learning Profile > BP000727.1
This page shows detailed deep learning-derived predictions and motifs for USF2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000727.1
Cell line/tissue: K562
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR578KEN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.08 0.00 0.00 0.00 0.00 0.04 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.12 -0.00 0.06 0.00 -0.00 0.00 -0.00 0.04 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.02 -0.00 0.00 -0.00 0.00 0.09 0.00 0.12 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 0.00 -0.00 0.01 0.00 0.10 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3647 3430 3684 3451 3177 3256 3805 3009 3066 3413 3635 3141 2946 3337 4481 3681 3447 3366 3749 2980 2855 4642 1899 44 15549 67 785 17 8 12865 167 2309 3571 4446 3628 3047 2865 2940 3560 3779 3140 2701 4198 5822 4582 3269 3716 4602 4050 4210 ]
C [ 4944 5126 4679 5095 5113 4767 4297 4222 4057 4392 4278 4602 5086 4963 4185 4011 4571 4624 3902 3438 3814 3364 6993 16042 196 10177 556 18 30 996 12039 6918 5129 4052 4478 4224 5148 4785 3883 3964 5257 6852 5606 3772 3817 4117 4342 3927 4051 4165 ]
G [ 4102 3962 4008 3939 3869 4485 3935 3809 4540 4852 5140 4628 3762 3687 4245 5499 5116 4170 4979 4544 7622 6740 2797 31 181 672 14754 66 16088 1734 845 1967 3308 4544 4933 4509 3759 4021 5002 5528 4757 3382 3381 3619 3788 4174 4821 4693 4892 3956 ]
T [ 3452 3627 3774 3660 3986 3637 4108 5105 4482 3488 3092 3774 4351 4158 3234 2954 3011 3985 3515 5183 1854 1399 4456 28 219 5229 50 16044 19 550 3094 4951 4137 3103 3106 4365 4373 4399 3700 2874 2991 3210 2960 2932 3958 4585 3266 2923 3152 3814 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 -0.00 0.02 -0.01 -0.02 0.08 -0.08 0.02 -0.03 -0.05 0.05 -0.04 0.00 0.01 0.01 0.01 ]
C [ 0.01 0.02 0.01 0.03 0.01 0.02 0.12 -0.02 0.10 0.01 -0.00 -0.03 0.00 0.06 0.02 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.02 0.04 0.01 -0.03 0.00 -0.01 0.10 -0.02 0.12 0.02 0.00 0.03 0.01 0.02 0.01 ]
T [ 0.01 0.01 0.00 0.00 -0.02 0.04 -0.05 -0.02 0.03 -0.08 0.10 -0.02 -0.01 0.03 0.00 0.01 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 402

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 106

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 80

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000728.1 USF2 ENCSR945NFL SK-N-SH Homo sapiens MA0526.5
Showing 1 profiles of page 2 from 2 pages