Detailed information of deep learning profile BP000726.1

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This page shows detailed deep learning-derived predictions and motifs for USF2 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000726.1
Cell line/tissue: A549
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR563FBT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.07 0.00 0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.09 -0.00 0.07 0.00 0.00 0.00 -0.00 0.01 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.03 -0.00 0.00 0.00 0.00 0.05 -0.00 0.09 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.03 0.00 -0.00 0.00 -0.00 0.06 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2567 2600 2744 2876 2731 2698 2375 2245 2422 3153 2778 2213 2263 2425 2203 2212 2622 3117 2766 2991 2379 2236 2773 3605 2103 496 12 11507 16 3581 328 19 3312 1124 1742 3458 2368 2697 2301 2195 2299 2822 2988 2694 2327 2550 3130 3291 2841 2635 ]
C [ 3215 3167 3143 3272 3352 2961 3384 3244 3399 3033 2792 2739 2491 2598 3393 3813 3545 2972 2868 3231 3501 3156 2366 1479 685 1344 11583 32 10091 777 348 25 2178 4304 5109 3146 3526 3093 3577 3833 3037 2773 2897 3273 3675 3486 3210 2846 3105 3253 ]
G [ 3113 2951 3156 2928 2885 2990 2885 2955 3207 3089 2790 2888 3870 4441 3560 2872 2915 3388 3785 3101 3086 2884 3907 4847 8649 918 17 52 617 7213 305 11524 4584 2436 2632 2647 3014 3313 3181 2811 3053 3477 3500 3290 2957 3016 2869 3026 2913 3237 ]
T [ 2720 2897 2572 2539 2647 2966 2971 3171 2587 2340 3255 3775 2991 2151 2459 2718 2533 2138 2196 2292 2649 3339 2569 1684 178 8857 3 24 891 44 10634 47 1541 3751 2132 2364 2707 2512 2556 2776 3226 2543 2230 2358 2656 2563 2406 2452 2756 2490 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 -0.00 0.02 -0.02 -0.02 0.07 -0.07 0.02 -0.03 -0.04 0.02 -0.02 -0.00 -0.00 0.00 0.00 ]
C [ 0.01 0.01 0.01 0.01 -0.01 0.01 0.09 -0.02 0.07 -0.02 0.00 -0.04 0.00 0.03 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.04 -0.00 -0.04 -0.00 -0.01 0.08 -0.02 0.09 0.01 0.00 0.01 0.01 0.01 0.01 ]
T [ 0.00 0.00 0.00 -0.00 -0.03 0.04 -0.04 -0.03 0.01 -0.07 0.06 -0.02 -0.01 0.01 -0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 614

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 63

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000728.1 USF2 ENCSR945NFL SK-N-SH Homo sapiens MA0526.5
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