Detailed information of deep learning profile BP000724.1

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This page shows detailed deep learning-derived predictions and motifs for USF2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000724.1
Cell line/tissue: K562
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR359NFW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 0.01 -0.00 0.00 0.11 0.00 0.01 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.13 -0.00 0.10 0.00 0.00 0.00 -0.00 0.03 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.04 -0.00 0.00 0.00 0.00 0.07 -0.00 0.13 0.00 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 0.06 0.00 0.00 0.00 -0.00 0.09 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 2663 2844 2971 3150 2899 2874 2646 2403 2621 3357 2997 2356 2493 2649 2406 2351 2889 3345 3223 3260 2483 2375 3197 3528 3517 315 16 11884 16 3882 282 18 4220 724 2089 3631 2635 2939 2482 2427 2449 3197 3294 2879 2514 2753 3395 3691 3119 2854 ]
C [ 3363 3100 3115 3204 3410 2912 3384 3390 3397 3033 2667 2695 2523 2548 3449 3853 3535 2907 2753 3288 3526 3288 2171 1351 613 1034 11880 20 10901 371 118 30 1654 6002 5041 3097 3506 3050 3545 3841 3098 2719 2745 3393 3606 3489 3152 2733 2883 3153 ]
G [ 2987 2897 3143 2846 2837 2972 2844 2803 3100 3005 2761 2911 3751 4515 3574 2789 2760 3309 3558 2957 3031 2888 3393 5104 7711 334 37 9 226 7638 153 11882 4500 1852 1916 2437 2865 3210 3075 2787 2981 3435 3521 3196 3020 3082 2923 3057 3049 3356 ]
T [ 2942 3114 2726 2755 2809 3197 3081 3359 2837 2560 3530 3993 3188 2243 2526 2962 2771 2394 2421 2450 2915 3404 3194 1972 114 10272 22 42 812 64 11402 25 1581 3377 2909 2790 2949 2756 2853 2900 3427 2604 2395 2487 2815 2631 2485 2474 2904 2592 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.01 0.01 0.04 -0.01 -0.04 0.11 -0.08 0.04 -0.02 -0.04 0.05 -0.03 0.00 0.00 0.01 0.01 ]
C [ 0.01 0.02 0.01 0.01 -0.01 0.01 0.13 -0.03 0.10 -0.03 -0.01 -0.03 -0.01 0.05 0.02 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.06 -0.01 -0.03 -0.01 -0.02 0.11 -0.03 0.13 0.01 0.00 0.02 0.01 0.02 0.01 ]
T [ 0.01 0.01 0.01 0.00 -0.04 0.06 -0.04 -0.03 0.03 -0.08 0.09 -0.04 -0.01 0.03 0.00 0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2904

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 485

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 465

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 369

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 330

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 136

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 36

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000728.1 USF2 ENCSR945NFL SK-N-SH Homo sapiens MA0526.5
Showing 1 profiles of page 2 from 2 pages