Detailed information of deep learning profile BP000720.1

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This page shows detailed deep learning-derived predictions and motifs for USF2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000720.1
Cell line/tissue: HepG2
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR000EEF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 0.09 0.00 0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.12 -0.00 0.09 0.00 0.00 0.00 -0.00 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.04 -0.00 0.00 -0.00 0.00 0.07 -0.00 0.12 0.00 -0.00 0.00 -0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.04 0.00 -0.00 0.00 -0.00 0.08 -0.00 -0.00 0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 1607 1630 1694 1780 1618 1643 1510 1412 1450 1821 1735 1403 1475 1506 1368 1352 1537 1835 1763 1743 1443 1457 1868 2045 1091 218 3 7048 6 1645 57 1 2523 535 990 2062 1523 1665 1373 1424 1460 1666 1812 1524 1424 1548 1804 1968 1713 1521 ]
C [ 1973 1836 1919 1921 2087 1787 1942 1979 2012 1880 1737 1631 1610 1595 1950 2218 2131 1838 1822 1962 2143 2061 1415 828 358 653 7054 5 6471 318 54 4 1118 2619 3118 1958 2068 1879 2083 2232 1843 1699 1725 2005 2151 2077 1993 1747 1893 2098 ]
G [ 1905 1864 1953 1900 1790 1898 1877 1831 1972 1886 1737 1891 2255 2651 2263 1825 1752 2032 2165 1899 1940 1806 2163 3085 5533 410 5 5 261 5089 42 7042 2655 1307 1706 1605 1858 1940 2070 1735 1897 2146 2126 2027 1864 1871 1796 1898 1835 1924 ]
T [ 1577 1732 1496 1461 1567 1734 1733 1840 1628 1475 1853 2137 1722 1310 1481 1667 1642 1357 1312 1458 1536 1738 1616 1104 80 5781 0 4 324 10 6909 15 766 2601 1248 1437 1613 1578 1536 1671 1862 1551 1399 1506 1623 1566 1469 1449 1621 1519 ]

Hypothetical CWM

   
A [ 0.01 0.00 0.01 0.00 0.02 -0.01 -0.02 0.09 -0.09 0.03 -0.03 -0.04 0.03 -0.02 0.00 0.00 0.01 0.01 ]
C [ 0.01 0.01 0.01 0.02 -0.01 0.01 0.12 -0.03 0.10 -0.02 0.00 -0.06 0.00 0.04 0.02 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.02 0.05 0.00 -0.06 -0.00 -0.02 0.10 -0.03 0.12 0.01 -0.00 0.02 0.01 0.01 0.01 ]
T [ 0.01 0.01 0.00 0.00 -0.03 0.04 -0.05 -0.04 0.02 -0.09 0.08 -0.02 -0.01 0.02 -0.00 0.01 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 73

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 56

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 39

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000728.1 USF2 ENCSR945NFL SK-N-SH Homo sapiens MA0526.5
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