Detailed information of deep learning profile BP000718.1

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This page shows detailed deep learning-derived predictions and motifs for USF2 in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000718.1
Cell line/tissue: H1
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR000ECD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.08 -0.00 0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.11 -0.00 0.07 0.00 0.00 0.00 0.00 0.02 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.03 -0.00 0.00 0.00 0.00 0.05 -0.00 0.11 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 0.07 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1562 1606 1597 1825 1590 1643 1325 1248 1387 2074 1684 1268 1250 1301 1229 1197 1622 1903 1841 1827 1390 1269 1643 2122 1440 224 1 7470 4 2513 121 1 2172 534 947 2204 1429 1717 1201 1347 1339 1743 1806 1617 1330 1512 2063 2186 1787 1590 ]
C [ 2258 2089 2173 2202 2387 1967 2369 2350 2265 2035 1877 1761 1731 1718 2391 2696 2472 2022 1848 2258 2361 2284 1700 1166 515 753 7487 8 6543 511 117 0 1496 3522 3643 2148 2426 2132 2578 2696 2051 1868 1892 2304 2549 2474 2185 1834 1891 2152 ]
G [ 2115 2072 2241 2035 2085 2024 2033 1984 2234 2033 1840 2000 2784 3283 2502 1946 1962 2419 2710 2140 2084 2066 2594 3313 5413 516 3 11 427 4462 95 7484 3068 1531 1614 1868 2085 2284 2211 1829 2136 2428 2460 2223 2041 2104 1945 2079 2143 2377 ]
T [ 1557 1725 1481 1430 1430 1858 1765 1910 1606 1350 2091 2463 1727 1190 1370 1653 1436 1148 1093 1267 1657 1873 1555 891 124 5999 1 3 518 6 7159 7 756 1905 1288 1272 1552 1359 1502 1620 1966 1453 1334 1348 1572 1402 1299 1393 1671 1373 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.00 -0.00 0.02 -0.02 -0.03 0.08 -0.08 0.02 -0.02 -0.06 0.03 -0.03 -0.01 -0.00 -0.00 0.00 ]
C [ 0.01 0.02 0.01 0.02 -0.00 0.01 0.11 -0.03 0.08 -0.02 0.00 -0.06 0.01 0.03 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.04 0.00 -0.05 -0.00 -0.01 0.08 -0.03 0.11 0.01 0.01 0.02 0.01 0.02 0.01 ]
T [ 0.00 -0.00 0.00 -0.01 -0.04 0.04 -0.05 -0.03 0.01 -0.08 0.07 -0.03 -0.02 0.01 -0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 470

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 276

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 103

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000728.1 USF2 ENCSR945NFL SK-N-SH Homo sapiens MA0526.5
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