Detailed information of deep learning profile BP000717.1

  1. Home
  2. Deep Learning Profile > BP000717.1
This page shows detailed deep learning-derived predictions and motifs for USF2 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF2
Model ID: BP000717.1
Cell line/tissue: GM12878
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0526.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q15853  
Source: ENCSR000DZU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.12 -0.00 0.00 -0.00 -0.00 0.05 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.00 0.18 -0.00 0.11 -0.00 0.00 0.00 -0.00 0.05 0.00 0.00 0.00 -0.00 ]
G [ 0.00 0.01 0.02 -0.00 -0.00 0.00 -0.00 0.15 -0.00 0.18 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 0.00 0.14 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 994 965 964 1032 959 980 926 1026 925 939 938 1104 1055 1004 994 936 862 771 1220 615 20 4354 24 196 9 7 3405 70 683 927 1000 988 913 817 835 997 1007 889 826 1008 1226 1088 940 955 1073 1049 1079 921 945 973 ]
C [ 1433 1430 1377 1267 1298 1240 1333 1278 1423 1439 1463 1413 1205 1445 1396 1462 1276 1285 1282 2049 4631 84 3223 118 16 15 347 3367 1937 1457 1401 1308 1368 1531 1455 1250 1308 1491 1630 1539 1345 1323 1275 1376 1316 1323 1299 1339 1255 1349 ]
G [ 1273 1344 1334 1311 1305 1352 1436 1442 1369 1210 1213 1276 1463 1347 1247 1381 1365 2005 1689 841 15 117 174 4354 15 4649 724 333 758 1181 1401 1468 1357 1353 1330 1456 1437 1394 1232 1213 1177 1239 1323 1402 1360 1338 1262 1417 1421 1348 ]
T [ 974 935 999 1064 1112 1102 979 928 957 1086 1060 881 951 878 1037 895 1171 613 483 1169 8 119 1253 6 4634 3 198 904 1296 1109 872 910 1036 973 1054 971 922 900 986 914 926 1024 1136 941 925 964 1034 997 1053 1004 ]

Hypothetical CWM

   
A [ 0.01 -0.00 0.01 -0.01 0.02 -0.02 -0.05 0.12 -0.14 0.03 -0.06 -0.06 0.08 -0.05 -0.00 0.01 0.01 0.01 ]
C [ 0.01 0.02 0.02 0.04 0.01 0.02 0.18 -0.06 0.15 -0.04 0.02 -0.08 0.00 0.08 0.03 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.03 0.06 0.01 -0.09 0.03 -0.05 0.15 -0.05 0.18 0.02 -0.01 0.04 0.02 0.03 0.01 ]
T [ 0.01 0.01 0.00 -0.00 -0.04 0.06 -0.06 -0.05 0.04 -0.14 0.14 -0.05 -0.03 0.03 -0.00 0.01 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 165

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 144

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 125

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 122

CWM

PFM

     

HCWM

11 profiles found for the same TF (USF2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000728.1 USF2 ENCSR945NFL SK-N-SH Homo sapiens MA0526.5
Showing 1 profiles of page 2 from 2 pages