Detailed information of deep learning profile BP000683.1

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This page shows detailed deep learning-derived predictions and motifs for CREB1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CREB1
Model ID: BP000683.1
Cell line/tissue: A549
Class: Basic leucine zipper factors (bZIP)
Family: CREB-related factors
JASPAR ID: MA0018.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P16220  
Source: ENCSR000BRC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 0.00 0.02 -0.00 0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.01 0.00 -0.00 0.04 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 0.01 0.00 -0.00 0.00 0.00 0.02 0.00 0.00 0.01 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 16 16 11 11 19 12 19 14 20 21 15 20 15 11 11 7 20 12 4 3 53 2 2 3 1 55 8 16 31 11 15 14 6 9 10 15 14 14 11 22 14 14 17 19 12 14 13 18 9 17 ]
C [ 11 10 16 17 13 12 13 5 12 12 11 12 12 11 12 21 5 17 2 1 0 4 0 0 55 0 4 28 5 14 12 8 17 15 17 12 15 11 11 14 8 5 18 8 11 11 17 18 18 15 ]
G [ 10 18 7 13 7 21 6 18 11 7 13 11 13 22 10 10 17 15 0 50 0 3 54 0 0 1 1 4 14 17 13 17 14 14 14 12 13 15 22 5 12 17 5 11 18 14 16 7 11 12 ]
T [ 19 12 22 15 17 11 18 19 13 16 17 13 16 12 23 18 14 12 50 2 3 47 0 53 0 0 43 8 6 14 16 17 19 18 15 17 14 16 12 15 22 20 16 18 15 17 10 13 18 12 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.00 0.00 -0.01 -0.01 0.02 -0.02 -0.01 -0.00 0.00 0.02 -0.01 0.00 0.01 -0.01 ]
C [ 0.00 0.01 -0.00 0.00 0.01 -0.01 -0.02 0.04 -0.02 -0.01 0.02 -0.02 0.00 0.01 -0.00 0.01 ]
G [ 0.00 0.00 0.01 0.00 -0.01 0.01 -0.00 -0.02 0.04 -0.02 -0.02 0.01 -0.01 -0.01 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 0.02 0.01 -0.01 0.00 -0.02 0.02 -0.01 -0.02 0.01 -0.00 -0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1499

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 148

CWM

PFM

     

HCWM

13 profiles found for the same TF (CREB1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000692.1 CREB1 ENCSR471WXT K562 Homo sapiens MA0018.5
BP000693.1 CREB1 ENCSR620DUQ MCF-7 Homo sapiens MA0018.5
BP000694.1 CREB1 ENCSR897JAS MCF-7 Homo sapiens MA0018.5
Showing 3 profiles of page 2 from 2 pages