Detailed information of deep learning profile BP000672.1

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This page shows detailed deep learning-derived predictions and motifs for JUND in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: JUND
Model ID: BP000672.1
Cell line/tissue: GM12878
Class: Basic leucine zipper factors (bZIP)
Family: Jun-related
JASPAR ID: MA0491.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17535  
Source: ENCSR000EYV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.01 0.01 0.03 0.00 -0.00 0.08 -0.00 0.00 0.00 0.04 -0.00 0.00 0.00 -0.00 ]
C [ -0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.02 -0.00 0.03 -0.00 -0.00 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
T [ 0.00 0.00 -0.00 0.00 0.03 0.01 0.01 0.00 -0.00 0.00 0.02 0.00 0.08 0.00 -0.00 -0.00 0.07 -0.00 -0.00 0.01 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 940 957 907 967 916 876 931 941 1003 1030 846 816 799 816 879 1476 516 262 527 482 664 1058 1376 1188 2191 6 21 2996 306 153 709 2211 576 802 952 848 757 819 849 854 961 965 877 924 821 865 910 892 916 874 ]
C [ 607 586 566 564 569 616 614 691 623 590 696 601 611 630 711 314 812 169 870 759 1280 306 286 78 234 4 84 11 1426 45 1736 111 564 1026 631 598 615 582 679 697 633 620 646 617 651 611 580 585 577 630 ]
G [ 628 589 666 624 636 628 579 547 559 515 574 554 617 687 557 639 987 401 310 293 362 1244 525 333 92 2 2577 18 1209 34 408 265 870 402 564 618 646 667 601 608 530 555 605 561 615 574 621 617 661 560 ]
T [ 890 933 926 910 944 945 941 886 880 930 949 1094 1038 932 918 636 750 2233 1358 1531 759 457 878 1466 548 3053 383 40 124 2833 212 478 1055 835 918 1001 1047 997 936 906 941 925 937 963 978 1015 954 971 911 1001 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.02 -0.01 -0.02 0.00 -0.01 -0.01 0.01 0.01 0.02 0.05 -0.05 -0.05 0.08 -0.01 -0.02 0.02 0.04 -0.01 0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.01 0.01 -0.03 0.02 0.01 0.03 -0.02 -0.02 -0.05 -0.02 -0.01 -0.03 -0.04 0.04 -0.05 0.04 -0.04 -0.01 0.01 0.00 0.00 ]
G [ 0.01 -0.00 0.01 0.02 0.00 -0.02 -0.01 -0.02 0.04 -0.00 -0.01 -0.04 -0.06 0.07 -0.05 0.03 -0.04 -0.02 0.00 0.00 -0.02 -0.00 0.00 ]
T [ 0.01 0.00 -0.01 0.00 0.04 0.01 0.02 0.00 -0.02 0.01 0.03 -0.00 0.08 0.02 -0.03 -0.03 0.07 -0.03 -0.02 0.02 0.01 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 294

CWM

PFM

     

HCWM

17 profiles found for the same TF (JUND) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000658.1 JUND ENCSR000BGK HepG2 Homo sapiens MA1141.2
BP000659.1 JUND ENCSR000BKP H1 Homo sapiens MA1141.2
BP000660.1 JUND ENCSR000BRF A549 Homo sapiens MA1141.2
BP000661.1 JUND ENCSR000BSA HCT116 Homo sapiens MA1141.2
BP000662.1 JUND ENCSR000BSK SK-N-SH Homo sapiens MA1141.2
BP000663.1 JUND ENCSR000BSU MCF-7 Homo sapiens MA1141.2
BP000664.1 JUND ENCSR000BVO T47D Homo sapiens MA1141.2
BP000665.1 JUND ENCSR000DJX K562 Homo sapiens MA1141.2
BP000666.1 JUND ENCSR000DYS GM12878 Homo sapiens MA1141.2
BP000667.1 JUND ENCSR000EBZ H1 Homo sapiens MA1141.2
Showing 10 profiles of page 1 from 2 pages