Detailed information of deep learning profile BP000654.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000654.1
Cell line/tissue: liver
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR324RCI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 0.01 0.01 0.00 -0.00 0.04 0.05 0.08 0.00 0.05 0.00 0.00 -0.00 0.00 ]
C [ 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.00 0.04 -0.00 -0.00 0.00 0.00 0.00 ]
G [ -0.00 -0.00 0.00 -0.00 0.04 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 0.01 0.00 0.07 0.00 -0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 4845 4764 4769 4846 4793 4933 4881 4787 4778 4835 4803 5197 4769 4562 3993 4419 4099 7238 8856 7801 3216 17 11845 15608 16697 2 16356 5861 4587 4319 5523 4920 4657 4625 4940 4603 4672 4828 5143 5214 4896 4944 5101 4954 5000 4840 4959 5027 5033 4824 ]
C [ 3575 3564 3559 3516 3670 3490 3530 3456 3733 3713 3752 3626 3760 3620 3967 4879 6132 1080 1766 116 17 1206 4865 1074 3 10665 49 2597 3444 3286 3788 3970 3256 3224 3119 3391 3507 3638 3626 3605 3405 3450 3424 3755 3715 3630 3781 3620 3453 3615 ]
G [ 3540 3592 3721 3889 3670 3546 3771 3764 3620 3482 3383 3443 3740 3544 4430 4454 2404 746 4259 2596 13315 1 16 19 13 16 74 3797 5001 5905 3966 3312 3668 3789 4123 4139 3823 3899 3601 3454 3580 3813 3737 3528 3641 3715 3572 3662 3715 3813 ]
T [ 4787 4827 4698 4496 4614 4778 4565 4740 4616 4717 4809 4481 4478 5021 4357 2995 4112 7683 1866 6234 199 15523 21 46 34 6064 268 4492 3715 3237 3470 4545 5166 5109 4565 4614 4745 4382 4377 4474 4866 4540 4485 4510 4391 4562 4435 4438 4546 4495 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 0.00 0.01 0.03 0.02 0.03 -0.03 0.06 0.06 0.08 -0.05 0.05 0.01 0.00 0.00 0.01 ]
C [ 0.01 0.01 0.02 0.02 -0.00 -0.01 -0.02 -0.04 0.01 0.04 0.02 -0.04 0.06 -0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.01 -0.02 0.02 0.00 0.05 -0.05 -0.06 -0.05 -0.03 -0.04 -0.01 0.01 0.02 0.02 0.01 ]
T [ 0.00 0.00 -0.00 0.00 0.03 -0.01 0.02 -0.01 0.08 -0.04 -0.01 -0.01 0.05 -0.00 0.01 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1764

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1146

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 745

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 45

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 44

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000656.1 FOXA1 ENCSR819LHG K562 Homo sapiens MA0148.5
BP000657.1 FOXA1 ENCSR865RXA HepG2 Homo sapiens MA0148.5
Showing 2 profiles of page 2 from 2 pages