Detailed information of deep learning profile BP000653.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000653.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR267DFA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.05 -0.00 0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.04 -0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.03 -0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]
T [ 0.00 -0.00 0.00 0.00 0.05 0.00 0.06 0.04 0.03 0.00 0.00 0.00 0.01 0.00 -0.00 ]

Frequency matrix

       
A [ 1533 1535 1537 1570 1580 1499 1525 1542 1641 1622 1570 1618 1625 1482 1261 986 1441 1451 97 1884 5 17 6 5522 73 2264 502 2885 1749 961 1508 1679 1634 1501 1618 1573 1586 1655 1659 1694 1541 1562 1675 1611 1612 1559 1596 1584 1518 1616 ]
C [ 1138 1099 1198 1180 1164 1108 1140 1244 1155 1245 1243 1221 1160 1089 1237 1801 1317 1182 31 13 1 1 2 0 4855 897 1508 138 767 1477 1241 1151 1244 1056 1127 1168 1104 1115 1146 1066 1183 1189 1090 1178 1095 1141 1138 1086 1089 1139 ]
G [ 1145 1208 1115 1105 1081 1145 1105 1071 1083 1047 1079 1069 1068 1268 1256 1184 988 971 12 3651 1 427 1675 26 3 32 521 256 1881 1680 1497 1187 1023 1079 1138 1158 1146 1116 1106 1127 1061 1123 1111 1111 1132 1122 1143 1116 1181 1139 ]
T [ 1732 1706 1698 1693 1723 1796 1778 1691 1669 1634 1656 1640 1695 1709 1794 1577 1802 1944 5408 0 5541 5103 3865 0 617 2355 3017 2269 1151 1430 1302 1531 1647 1912 1665 1649 1712 1662 1637 1661 1763 1674 1672 1648 1709 1726 1671 1762 1760 1654 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 0.00 -0.02 0.04 -0.02 -0.02 -0.04 0.06 -0.02 0.02 -0.01 0.02 0.01 -0.00 0.00 0.00 ]
C [ 0.01 0.02 0.01 0.00 -0.01 -0.03 -0.03 -0.05 -0.05 -0.04 0.05 0.00 0.02 -0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.03 0.06 -0.03 0.02 0.03 0.02 -0.03 -0.02 -0.01 -0.01 0.01 0.01 0.01 0.00 ]
T [ 0.01 -0.00 0.00 0.00 0.05 -0.06 0.06 0.04 0.04 -0.04 0.01 0.01 0.02 0.01 -0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1918

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 685

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 31

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 28

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000656.1 FOXA1 ENCSR819LHG K562 Homo sapiens MA0148.5
BP000657.1 FOXA1 ENCSR865RXA HepG2 Homo sapiens MA0148.5
Showing 2 profiles of page 2 from 2 pages