Detailed information of deep learning profile BP000649.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000649.1
Cell line/tissue: A549
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR000BPX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.02 0.03 0.00 0.02 0.00 -0.00 0.00 0.00 ]
C [ 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.03 -0.00 -0.00 0.00 0.00 0.00 ]
G [ -0.00 -0.00 0.00 -0.00 0.02 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 ]
T [ 0.00 0.00 -0.00 0.00 -0.00 0.03 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1000 952 958 962 917 890 954 975 959 869 958 950 993 928 859 944 1068 1011 918 825 951 735 1357 1605 1475 535 5 2393 3048 3099 0 2999 1117 949 856 1055 1030 937 953 949 959 894 932 966 970 946 929 931 981 990 ]
C [ 615 655 581 645 646 679 619 615 587 675 625 655 648 587 646 579 589 584 624 807 782 1123 181 425 40 5 5 680 22 0 3100 7 538 664 620 648 649 621 587 570 593 653 623 637 645 590 618 638 615 591 ]
G [ 655 629 640 648 644 614 605 609 684 691 579 631 598 649 650 634 597 675 648 672 814 438 112 770 389 2501 3 14 14 1 0 12 666 829 1082 684 628 681 654 706 730 635 645 605 616 641 682 654 648 655 ]
T [ 832 866 923 847 895 919 924 903 872 867 940 866 863 938 947 945 848 832 912 798 555 806 1452 302 1198 61 3089 15 18 2 2 84 781 660 544 715 795 863 908 877 820 920 902 894 871 925 873 879 858 866 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 0.00 0.01 0.01 0.01 0.01 -0.01 0.03 0.02 0.03 -0.02 0.02 0.01 0.00 0.00 0.00 ]
C [ 0.00 0.01 0.00 0.01 -0.00 -0.00 -0.01 -0.02 0.01 0.01 0.02 -0.01 0.03 -0.02 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 0.00 -0.01 0.01 -0.00 0.03 -0.02 -0.02 -0.02 -0.01 -0.01 -0.00 0.00 0.01 0.01 0.00 ]
T [ 0.00 0.00 -0.00 0.00 0.01 -0.00 0.01 -0.00 0.03 -0.02 -0.01 -0.01 0.02 -0.00 0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 6255

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1473

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1319

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 802

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 767

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 339

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 238

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 59

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 57

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 34

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000656.1 FOXA1 ENCSR819LHG K562 Homo sapiens MA0148.5
BP000657.1 FOXA1 ENCSR865RXA HepG2 Homo sapiens MA0148.5
Showing 2 profiles of page 2 from 2 pages