Detailed information of deep learning profile BP000648.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000648.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR000BMO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.09 0.00 0.01 -0.00 0.02 0.00 ]
C [ 0.00 0.01 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.06 -0.00 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.07 0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.01 ]
T [ 0.00 -0.00 0.00 0.00 0.07 0.00 0.10 0.07 0.06 -0.00 0.00 0.01 0.01 0.01 -0.00 ]

Frequency matrix

       
A [ 4786 4699 4971 5353 5049 5092 4757 4758 4819 5039 4843 4912 5059 5076 4578 3941 3344 3889 4399 451 5198 16 80 33 18630 335 8126 2018 9057 4792 3426 4773 5574 5435 4537 4990 5080 5151 5181 5206 5349 5009 5077 5401 4958 4936 4777 4967 4949 4907 ]
C [ 4102 4400 4081 4200 4145 4608 3916 4216 4998 4622 4606 4155 4130 4664 4001 4284 6736 4901 4258 118 42 24 20 24 3 15980 2960 5430 852 3092 4885 4561 4171 4226 4067 4205 4136 4086 4089 4174 3975 4646 4394 4068 4313 4213 4218 4434 4257 4024 ]
G [ 4131 4183 4515 3924 4324 3877 4049 3925 3857 3965 3904 4257 4561 3798 4653 4951 3891 3801 3322 83 13447 16 1447 5032 30 66 221 2114 1336 6609 4930 5088 4268 3958 4449 4118 4264 4104 4082 4314 4244 3942 3959 4065 4068 4346 4338 4068 4301 4378 ]
T [ 5672 5409 5124 5214 5173 5114 5969 5792 5017 5065 5338 5367 4941 5153 5459 5515 4720 6100 6712 18039 4 18635 17144 13602 28 2310 7384 9129 7446 4198 5450 4269 4678 5072 5638 5378 5211 5350 5339 4997 5123 5094 5261 5157 5352 5196 5358 5222 5184 5382 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.00 -0.02 0.06 -0.02 -0.02 -0.04 0.09 -0.01 0.03 -0.01 0.04 0.01 -0.01 -0.00 -0.00 ]
C [ 0.02 0.03 0.02 0.01 -0.01 -0.04 -0.03 -0.08 -0.07 -0.08 0.08 0.00 0.03 -0.02 0.01 0.02 0.01 0.01 ]
G [ 0.02 0.02 0.02 0.02 -0.03 0.10 -0.05 0.03 0.05 0.04 -0.04 -0.02 -0.01 -0.01 0.03 0.02 0.02 0.01 ]
T [ 0.00 0.00 0.01 0.02 0.07 -0.08 0.10 0.07 0.08 -0.03 0.02 0.02 0.03 0.02 -0.00 0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6877

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 5008

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1222

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1182

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 911

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 727

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 272

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 210

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 52

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 42

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 31

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000656.1 FOXA1 ENCSR819LHG K562 Homo sapiens MA0148.5
BP000657.1 FOXA1 ENCSR865RXA HepG2 Homo sapiens MA0148.5
Showing 2 profiles of page 2 from 2 pages