Detailed information of deep learning profile BP000606.1

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This page shows detailed deep learning-derived predictions and motifs for GATA2 in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GATA2
Model ID: BP000606.1
Cell line/tissue: SK-N-SH
Class: Other C4 zinc finger-type factors
Family: C4-GATA-related
JASPAR ID: MA0036.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P23769  
Source: ENCSR706VOO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 0.01 -0.00 0.00 0.00 0.00 0.06 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 ]
T [ -0.00 0.00 -0.00 0.02 0.03 0.00 0.07 0.00 0.01 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 4185 4318 4279 4263 4171 4293 4451 4519 4393 4195 4025 4424 3998 3821 3664 3251 1984 1866 814 1279 16270 0 22 5013 1949 4497 4396 4308 4030 5218 4293 4152 5234 4823 3842 4161 4347 4203 4412 4252 4301 4305 4298 4259 4303 4343 4241 4353 4385 4378 ]
C [ 3968 3837 3906 3794 4071 3891 3877 3967 3675 3858 3948 3692 3595 4106 3477 4237 4863 7642 1575 112 0 0 16214 58 4576 4147 3542 4086 3991 3903 3731 4853 3666 3457 4308 4297 3639 3975 3854 3961 3836 3784 3770 3870 3984 3802 3754 3691 3682 3753 ]
G [ 3660 3556 3579 3562 3628 3526 3515 3332 3351 3393 3369 3531 3536 3844 3897 3462 3348 3421 309 233 0 0 0 338 6623 2363 3284 3048 3464 3344 3005 3110 2759 3013 3037 3108 3577 3695 3565 3524 3592 3659 3629 3670 3494 3653 3715 3652 3623 3623 ]
T [ 4457 4559 4506 4651 4400 4560 4427 4452 4851 4824 4928 4623 5141 4499 5232 5320 6075 3341 13572 14646 0 16270 34 10861 3122 5263 5048 4828 4785 3805 5241 4155 4611 4977 5083 4704 4707 4397 4439 4533 4541 4522 4573 4471 4489 4472 4560 4574 4580 4516 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 0.00 0.00 0.01 0.08 -0.01 -0.00 0.02 0.00 0.01 0.00 0.00 ]
C [ 0.01 0.01 0.01 0.02 0.01 -0.01 -0.02 -0.04 0.06 -0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 -0.01 0.01 -0.00 -0.01 -0.02 0.02 0.02 0.01 0.01 0.01 ]
T [ 0.00 0.00 0.01 0.00 0.02 0.03 -0.04 0.07 0.00 0.02 -0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3666

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1456

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1425

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1335

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1081

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 665

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 644

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 398

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 318

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 246

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 206

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 138

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_21

Num. of seqlets: 35

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_22

Num. of seqlets: 26

CWM

PFM

     

HCWM

7 profiles found for the same TF (GATA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000600.1 GATA2 ENCSR000BKM K562 Homo sapiens MA0036.4
BP000601.1 GATA2 ENCSR000DKA K562 Homo sapiens MA0036.4
BP000602.1 GATA2 ENCSR000EVW endothelial cell of umbilical vein Homo sapiens MA0036.4
BP000603.1 GATA2 ENCSR000EWG K562 Homo sapiens MA0036.4
BP000604.1 GATA2 ENCSR000EYB SH-SY5Y Homo sapiens MA0036.4
BP000605.1 GATA2 ENCSR257RKC K562 Homo sapiens MA0036.4
BP000607.1 GATA2 ENCSR897LDT HepG2 Homo sapiens MA0036.4
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