JASPAR - GATA2 - BP000601.1

This page shows detailed deep learning-derived predictions and motifs for GATA2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	GATA2
Model ID:	BP000601.1
Cell line/tissue:	K562
Class:	Other C4 zinc finger-type factors
Family:	C4-GATA-related
JASPAR ID:	MA0036.4
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P23769
Source:	ENCSR000DKA
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 24320

Contribution weight matrix (CWM)

A [	0.00	-0.00	-0.00	0.01	0.00	0.05	0.00	0.03	0.02	-0.00	0.00	]
C [	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	-0.00	0.00	0.00	]
G [	0.00	0.00	0.00	-0.00	0.06	0.00	0.00	0.00	0.00	0.01	0.00	]
T [	-0.00	0.00	-0.00	0.00	0.00	-0.00	0.06	-0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	6974	6902	6917	7006	6843	7059	6700	6796	6535	6820	6749	6695	7422	6735	6202	5769	4801	5421	6297	6877	6621	6744	6755	8122	5712	16156	3	24276	6	21207	18157	4962	9717	8398	6615	6608	6594	6917	6489	6701	6722	6692	6981	6834	6780	7120	6759	6951	6719	7043	]
C [	5395	5271	5315	5176	5398	5234	5414	5153	5504	5297	5584	6082	5245	5208	6292	4730	3587	4510	4718	5082	5157	5087	4931	3936	8058	692	3	9	12	306	991	5453	4566	4369	6292	5743	5371	4970	5037	5306	5273	5372	5372	5175	5413	5206	5417	5464	5439	5210	]
G [	5670	5663	5943	5748	5988	5820	6011	5844	6091	5990	6088	5805	5798	6204	6130	5120	8744	8453	6863	5968	5852	6175	5958	6636	7013	295	24307	4	7	225	3415	10869	7139	5793	5236	5431	5506	5949	6422	6009	5887	5900	5692	5760	6035	5701	5827	5752	5841	5849	]
T [	6281	6484	6145	6390	6091	6207	6195	6527	6190	6213	5899	5738	5855	6173	5696	8701	7188	5936	6442	6393	6690	6314	6676	5626	3537	7177	7	31	24295	2582	1757	3036	2898	5760	6177	6538	6849	6484	6372	6304	6438	6356	6275	6551	6092	6293	6317	6153	6321	6218	]

Hypothetical CWM

A [	-0.00	0.00	0.00	0.00	0.02	-0.02	0.05	-0.04	0.03	0.02	-0.01	0.00	0.00	-0.00	-0.00	]
C [	0.01	0.00	0.01	0.01	0.01	-0.02	-0.03	-0.01	-0.01	-0.01	0.02	0.01	0.00	0.01	0.01	]
G [	0.01	0.01	0.01	0.01	-0.03	0.06	-0.04	-0.03	-0.02	0.00	0.02	0.01	0.00	0.00	0.00	]
T [	-0.00	-0.00	0.00	-0.00	0.01	-0.02	-0.02	0.06	0.00	-0.01	-0.01	-0.01	-0.00	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 847

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 558

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 199

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 152

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 100

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 92

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 60

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 41

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 35

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 32

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 31

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 23

CWM

PFM

HCWM

7 profiles found for the same TF (GATA2) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP000600.1	GATA2	ENCSR000BKM	K562	Homo sapiens	MA0036.4
BP000602.1	GATA2	ENCSR000EVW	endothelial cell of umbilical vein	Homo sapiens	MA0036.4
BP000603.1	GATA2	ENCSR000EWG	K562	Homo sapiens	MA0036.4
BP000604.1	GATA2	ENCSR000EYB	SH-SY5Y	Homo sapiens	MA0036.4
BP000605.1	GATA2	ENCSR257RKC	K562	Homo sapiens	MA0036.4
BP000606.1	GATA2	ENCSR706VOO	SK-N-SH	Homo sapiens	MA0036.4
BP000607.1	GATA2	ENCSR897LDT	HepG2	Homo sapiens	MA0036.4