Detailed information of deep learning profile BP000599.1

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This page shows detailed deep learning-derived predictions and motifs for REST in HEK293 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000599.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR896UBV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.04 -0.00 -0.00 0.13 -0.00 -0.00 0.02 -0.01 -0.00 -0.00 0.08 -0.00 0.12 0.00 -0.00 -0.00 0.00 -0.00 ]
C [ -0.00 0.00 0.04 -0.00 0.00 0.01 0.00 0.15 0.08 -0.00 0.00 0.00 -0.00 -0.00 0.06 0.00 -0.00 0.04 -0.00 0.02 0.03 ]
G [ 0.00 -0.00 -0.00 0.00 0.08 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.14 0.16 -0.00 0.00 -0.00 0.12 -0.00 0.03 0.00 -0.00 ]
T [ 0.01 0.03 -0.00 -0.00 -0.00 0.01 -0.00 0.00 -0.00 0.00 0.03 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 1122 1126 1110 1234 1153 1107 1205 1119 1142 1083 1104 1246 1122 1058 844 531 614 3228 420 436 4574 12 148 2371 885 141 107 3978 84 4532 208 820 1107 783 685 1231 1145 1035 1081 1280 954 1276 980 1093 1079 1032 1170 1116 1077 979 ]
C [ 1092 1121 1227 1203 1247 1208 1108 1191 1087 1112 1164 1058 1109 1225 924 1109 2786 314 500 2133 11 4593 4191 574 597 8 7 373 3582 24 35 2352 159 2443 2818 1533 1114 1081 1325 1165 1525 1146 1363 1291 1225 1242 1228 1165 1180 1216 ]
G [ 1219 1244 1214 1210 1230 1208 1262 1251 1184 1328 1163 1210 1231 1234 1091 685 492 809 3436 1095 16 6 33 288 407 4454 4496 86 702 35 4333 598 2014 988 265 600 1271 1508 1221 1262 1128 1141 1148 1173 1235 1147 1156 1276 1256 1289 ]
T [ 1183 1125 1065 969 986 1093 1041 1055 1203 1093 1185 1102 1154 1099 1757 2291 724 265 260 952 15 5 244 1383 2727 13 6 179 248 25 40 846 1336 402 848 1252 1086 992 989 909 1009 1053 1125 1059 1077 1195 1062 1059 1103 1132 ]

Hypothetical CWM

   
A [ 0.00 0.01 -0.02 0.00 0.05 -0.02 -0.02 0.13 -0.03 -0.02 0.04 -0.01 0.01 -0.00 0.10 -0.06 0.12 0.01 -0.01 0.01 0.02 0.00 0.01 0.01 0.00 0.00 ]
C [ 0.01 -0.01 0.01 0.05 0.00 0.01 0.04 -0.04 0.15 0.08 0.00 0.04 -0.02 -0.07 0.02 0.09 0.00 -0.03 0.08 -0.05 0.04 0.05 0.03 0.01 0.01 0.01 ]
G [ 0.02 0.01 -0.00 -0.01 0.02 0.09 0.02 -0.03 -0.03 0.00 0.00 -0.01 0.14 0.16 -0.04 0.03 -0.02 0.13 -0.01 0.07 0.02 -0.02 0.00 0.01 0.01 0.01 ]
T [ 0.01 0.02 0.04 0.00 -0.03 -0.03 0.03 -0.04 -0.03 0.01 0.02 0.06 -0.06 -0.03 -0.01 0.02 -0.06 -0.05 0.00 0.02 -0.02 0.01 0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 5637

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 863

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 794

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 297

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 228

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 139

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 137

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 131

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 120

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages