Detailed information of deep learning profile BP000595.1

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This page shows detailed deep learning-derived predictions and motifs for REST in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000595.1
Cell line/tissue: liver
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR867WPH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.04 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.07 0.03 0.00 -0.00 -0.00 ]
C [ -0.00 0.00 0.03 0.00 0.15 0.00 0.00 0.00 0.20 0.18 -0.00 0.00 -0.00 0.00 0.00 0.01 0.15 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.03 0.03 -0.00 0.05 -0.00 0.00 0.08 -0.00 0.00 0.00 0.01 -0.00 0.10 0.20 0.00 0.03 0.00 0.00 0.11 0.00 -0.00 -0.00 0.00 0.00 ]
T [ 0.00 0.00 0.00 -0.01 -0.00 0.12 -0.00 0.12 -0.00 -0.00 -0.01 0.02 -0.00 0.00 0.17 -0.00 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 421 408 401 388 448 411 419 427 376 373 329 319 325 373 414 302 171 521 297 28 23 103 56 9 12 1032 410 155 0 10 242 35 68 135 1215 901 479 418 419 408 389 443 404 343 346 362 353 354 410 406 ]
C [ 494 505 480 424 436 434 463 419 448 441 489 529 616 461 211 81 361 713 193 1644 8 260 19 1727 1704 114 188 12 4 8 389 1624 87 69 166 378 481 516 460 426 509 464 503 497 506 525 466 483 469 484 ]
G [ 482 468 448 503 489 531 530 596 477 570 449 543 397 432 631 1119 954 66 1010 16 23 1333 86 4 6 340 224 1526 1738 9 945 45 21 1453 297 208 410 374 415 465 435 400 431 439 464 456 459 470 424 429 ]
T [ 355 371 423 437 379 376 340 310 451 368 485 361 414 486 496 250 266 452 252 64 1698 56 1591 12 30 266 930 59 10 1725 176 48 1576 95 74 265 382 444 458 453 419 445 414 473 436 409 474 445 449 433 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.01 0.00 -0.03 0.02 0.02 -0.04 -0.01 0.01 -0.01 0.01 -0.05 0.09 0.03 0.06 -0.02 -0.04 0.04 -0.04 -0.06 -0.01 0.09 0.06 0.02 -0.00 0.00 0.00 ]
C [ 0.03 0.02 0.02 0.00 0.04 0.08 0.03 0.16 -0.04 0.04 -0.02 0.20 0.18 0.01 0.04 0.02 -0.00 -0.03 0.06 0.16 0.02 -0.02 -0.00 0.02 0.03 0.03 0.02 0.02 ]
G [ 0.02 0.02 0.04 0.05 0.05 -0.03 0.09 -0.02 0.03 0.11 0.03 -0.07 0.04 0.07 0.04 0.11 0.20 -0.01 0.07 0.02 0.03 0.12 0.04 -0.02 0.01 0.02 0.03 0.02 ]
T [ -0.00 0.01 0.01 0.01 0.02 0.02 -0.03 0.00 0.12 -0.02 0.13 -0.02 -0.01 -0.00 0.05 -0.03 -0.03 0.18 -0.02 -0.01 0.09 0.00 -0.06 0.01 0.01 0.02 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 6621

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2853

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2696

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1782

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1666

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 916

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 754

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 276

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 158

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 135

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 39

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages