Detailed information of deep learning profile BP000592.1

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This page shows detailed deep learning-derived predictions and motifs for REST in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000592.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR054JMQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.02 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.05 0.02 0.00 -0.00 -0.00 ]
C [ -0.00 -0.00 0.00 0.02 -0.00 0.11 0.00 0.00 -0.00 0.13 0.12 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.11 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.01 0.03 0.02 -0.00 0.04 -0.00 0.00 0.06 -0.00 0.00 0.00 0.01 -0.00 0.07 0.14 0.00 0.03 0.00 0.00 0.06 0.00 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.06 -0.00 -0.00 -0.00 0.01 -0.00 0.00 0.13 -0.00 -0.00 0.06 0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 329 350 329 306 348 349 348 345 306 311 255 263 243 304 330 235 133 433 206 23 24 85 89 23 17 769 348 80 14 15 161 41 30 95 1066 766 396 319 338 322 328 350 302 278 271 279 291 280 301 328 ]
C [ 437 458 416 389 412 381 372 404 397 380 468 479 547 408 190 63 307 658 184 1396 22 229 33 1443 1410 127 164 31 10 22 339 1363 97 58 154 354 444 476 463 420 453 407 452 457 466 482 438 432 440 416 ]
G [ 475 395 414 469 455 457 520 519 437 537 432 459 400 415 583 1037 847 59 896 21 33 1162 122 9 15 348 191 1339 1462 19 878 43 40 1257 228 190 370 347 365 403 383 388 388 398 412 417 415 417 395 400 ]
T [ 260 298 342 337 286 314 261 233 361 273 346 300 311 374 398 166 214 351 215 61 1422 25 1257 26 59 257 798 51 15 1445 123 54 1334 91 53 191 291 359 335 356 337 356 359 368 352 323 357 372 365 357 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.00 0.00 -0.03 0.02 0.00 -0.03 -0.04 0.01 0.00 -0.01 -0.05 0.04 0.02 0.03 -0.03 -0.03 0.02 -0.04 -0.05 0.00 0.06 0.03 0.01 -0.01 -0.01 ]
C [ 0.01 0.01 0.01 -0.01 0.02 0.06 -0.00 0.11 0.01 0.03 -0.03 0.13 0.12 -0.00 0.01 -0.00 -0.02 -0.02 0.03 0.11 0.03 -0.02 0.00 0.01 0.02 0.02 0.02 ]
G [ 0.01 0.01 0.03 0.04 0.04 -0.05 0.06 -0.04 -0.01 0.08 0.01 -0.07 -0.00 0.04 0.01 0.07 0.14 -0.03 0.04 -0.01 0.00 0.07 0.01 -0.02 0.01 0.01 0.02 ]
T [ -0.00 -0.00 0.00 -0.00 0.01 0.00 -0.01 -0.00 0.08 -0.06 0.07 0.00 -0.01 -0.01 0.03 -0.02 -0.03 0.13 -0.03 -0.01 0.06 -0.01 -0.03 0.00 -0.00 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 878

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 281

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 207

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 124

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages