Detailed information of deep learning profile BP000591.1

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This page shows detailed deep learning-derived predictions and motifs for REST in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000591.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BVI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.10 -0.00 -0.01 0.17 -0.00 -0.00 0.02 -0.01 -0.00 -0.00 0.12 -0.00 0.16 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.01 0.00 0.00 -0.00 0.00 0.11 0.00 0.00 0.04 0.00 0.19 0.15 -0.00 0.01 0.00 0.00 -0.00 0.12 0.00 0.00 0.06 -0.00 0.04 0.06 0.01 ]
G [ 0.01 0.01 0.00 0.00 -0.00 -0.00 0.00 0.19 0.01 0.00 0.00 0.00 -0.00 -0.00 0.23 0.23 0.00 0.00 0.00 0.22 -0.00 0.04 0.01 -0.00 0.00 ]
T [ -0.00 -0.01 0.00 0.03 0.08 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.03 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.01 0.00 -0.00 ]

Frequency matrix

       
A [ 512 518 525 549 500 516 574 481 513 471 527 559 549 434 299 114 124 1878 62 169 2070 17 41 1188 367 69 63 1815 32 1985 91 364 480 326 293 557 563 494 420 576 438 562 375 434 453 448 547 497 439 421 ]
C [ 520 543 556 550 571 545 503 544 494 507 533 506 435 529 290 358 1691 37 75 1217 7 2075 1932 247 413 37 23 137 1621 35 44 1099 66 1169 1350 729 517 484 658 537 733 583 682 625 625 570 564 551 562 575 ]
G [ 569 553 570 596 603 590 596 599 540 643 525 557 607 560 423 182 96 153 1945 417 15 10 10 168 183 1984 2007 61 300 46 1932 259 962 428 87 284 585 751 620 615 488 527 512 528 558 526 531 576 620 573 ]
T [ 512 499 462 418 439 462 440 489 566 492 528 491 522 590 1101 1459 202 45 31 310 21 11 130 510 1150 23 20 100 160 47 46 391 605 190 383 543 448 384 415 385 454 441 544 526 477 569 471 489 492 544 ]

Hypothetical CWM

   
A [ 0.01 -0.01 0.02 0.00 0.01 -0.06 -0.03 0.11 -0.04 -0.07 0.17 -0.03 -0.07 0.05 -0.03 -0.04 -0.03 0.13 -0.12 0.17 -0.03 -0.02 0.02 0.01 -0.00 0.01 0.01 -0.00 -0.00 ]
C [ 0.01 0.03 0.01 0.02 -0.03 0.04 0.13 0.01 0.02 0.09 -0.07 0.20 0.16 0.01 0.10 0.01 -0.09 0.01 0.15 -0.00 -0.05 0.12 -0.11 0.07 0.09 0.05 0.03 0.02 0.02 ]
G [ 0.03 0.04 0.03 0.03 0.02 -0.01 -0.02 0.01 0.20 0.07 -0.03 -0.01 -0.01 0.05 -0.03 0.23 0.24 -0.05 0.05 -0.04 0.22 0.00 0.11 0.06 -0.06 0.02 0.01 0.02 0.01 ]
T [ -0.00 -0.01 -0.01 0.02 0.05 0.10 0.00 -0.07 -0.08 0.04 -0.01 -0.03 0.04 0.01 0.08 -0.07 -0.02 -0.01 0.03 -0.07 -0.07 0.00 0.04 -0.06 0.03 -0.00 0.01 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 694

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 113

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 100

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages