Detailed information of deep learning profile BP000587.1

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This page shows detailed deep learning-derived predictions and motifs for REST in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000587.1
Cell line/tissue: MCF-7
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BSP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.14 -0.00 -0.01 0.24 0.00 -0.00 0.03 -0.01 -0.00 -0.00 0.12 -0.00 0.18 -0.00 -0.01 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.12 0.00 0.00 0.05 0.00 0.25 0.15 -0.00 0.01 0.00 0.00 -0.00 0.12 0.00 -0.00 0.06 -0.00 0.04 0.05 ]
G [ 0.00 0.01 0.00 0.00 -0.00 0.00 0.21 0.00 0.00 0.00 0.00 -0.00 -0.00 0.21 0.25 -0.00 0.00 -0.00 0.20 -0.00 0.04 0.00 -0.00 ]
T [ -0.00 0.00 0.02 0.07 -0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.04 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 -0.01 0.00 ]

Frequency matrix

       
A [ 630 652 629 703 627 634 683 613 617 589 605 713 650 542 398 124 130 2485 28 197 2579 11 71 1387 569 84 79 2168 36 2555 135 438 599 397 362 665 679 593 577 745 516 712 470 584 579 580 689 654 588 554 ]
C [ 604 619 746 686 718 692 594 691 600 645 669 583 574 690 369 488 2229 19 18 1459 7 2591 2367 337 464 6 15 258 2032 14 25 1310 96 1415 1659 895 615 605 811 682 899 670 826 784 718 654 720 660 671 699 ]
G [ 689 703 671 698 730 710 773 700 674 762 654 669 716 707 584 288 62 81 2550 619 12 3 26 197 249 2507 2514 68 381 16 2431 360 1192 515 128 346 740 923 724 710 645 659 672 636 714 658 649 735 754 714 ]
T [ 688 637 565 524 536 575 561 607 720 615 683 646 671 672 1260 1711 190 26 15 336 13 6 147 690 1329 14 3 117 162 26 20 503 724 284 462 705 577 490 499 474 551 570 643 607 600 719 553 562 598 644 ]

Hypothetical CWM

   
A [ -0.01 0.01 0.00 0.01 -0.07 -0.02 0.14 -0.03 -0.07 0.24 -0.05 -0.04 0.07 -0.03 -0.01 -0.00 0.14 -0.12 0.18 0.02 -0.04 0.01 0.02 -0.01 0.01 -0.00 -0.00 -0.01 ]
C [ 0.03 0.02 0.02 -0.03 0.03 0.14 0.02 -0.01 0.10 -0.07 0.25 0.17 0.02 0.08 -0.01 -0.10 0.02 0.16 -0.00 -0.06 0.13 -0.09 0.08 0.08 0.05 0.02 0.02 0.02 ]
G [ 0.02 0.02 0.03 0.03 0.01 -0.04 0.03 0.21 0.06 -0.04 -0.04 -0.04 0.02 -0.02 0.22 0.26 -0.06 0.04 -0.05 0.21 0.01 0.11 0.04 -0.04 0.01 0.02 0.02 0.01 ]
T [ 0.01 -0.01 0.01 0.05 0.10 -0.01 -0.14 -0.08 0.04 -0.08 -0.06 0.02 0.02 0.09 -0.08 -0.06 -0.02 0.05 -0.07 -0.09 0.00 0.04 -0.05 0.02 0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 3305

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1331

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 590

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 226

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 197

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 134

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 44

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 26

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_4

Num. of seqlets: 24

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_5

Num. of seqlets: 22

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages