Detailed information of deep learning profile BP000582.1

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This page shows detailed deep learning-derived predictions and motifs for REST in PFSK-1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000582.1
Cell line/tissue: PFSK-1
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BOX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.04 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.05 0.01 -0.00 -0.00 ]
C [ -0.00 -0.00 0.00 0.04 -0.00 0.20 0.00 0.00 -0.00 0.24 0.21 -0.00 -0.00 0.00 0.00 0.00 0.01 0.16 0.00 -0.00 0.00 0.01 0.01 0.01 ]
G [ 0.01 0.05 0.05 -0.00 0.06 -0.00 0.00 0.12 -0.00 0.00 0.00 0.01 -0.00 0.12 0.22 0.00 0.03 0.00 0.00 0.10 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.17 -0.00 0.10 -0.00 -0.00 -0.01 0.02 -0.00 -0.00 0.17 -0.01 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 954 946 877 867 1007 900 907 938 847 851 791 762 816 931 1059 703 350 1218 723 32 23 213 138 6 13 2369 1121 232 8 28 722 214 224 562 2047 1525 938 944 946 969 899 1015 895 871 922 835 821 848 941 1012 ]
C [ 1063 1030 1065 922 931 1021 956 964 935 920 1026 1059 1269 1059 474 165 800 1655 457 3650 16 557 62 3778 3756 303 287 25 17 30 902 3002 531 320 540 912 1007 1062 998 993 1077 980 1034 1043 1039 1022 1003 1016 1026 1002 ]
G [ 1031 983 963 1038 1029 1042 1123 1147 965 1245 1000 1122 914 896 1320 2452 2156 126 1992 24 23 3024 286 8 2 508 484 3434 3815 33 1857 298 217 2510 891 746 1062 899 859 984 964 915 1004 945 1000 1050 995 1080 897 917 ]
T [ 802 891 945 1023 883 887 864 801 1103 834 1033 907 851 964 997 530 544 851 678 144 3788 56 3364 58 79 670 1958 159 10 3759 369 336 2878 458 372 667 843 945 1047 904 910 940 917 991 889 943 1031 906 986 919 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.00 0.01 -0.06 0.03 0.00 -0.08 -0.07 0.03 -0.01 -0.05 -0.09 0.08 0.02 0.01 -0.02 -0.05 0.04 -0.05 -0.08 -0.01 0.07 0.02 -0.00 -0.01 -0.00 ]
C [ 0.02 0.03 0.01 -0.02 0.05 0.12 0.00 0.21 -0.03 0.07 -0.04 0.25 0.21 0.00 0.04 0.03 -0.01 -0.01 0.05 0.17 0.04 -0.01 0.02 0.03 0.03 0.03 0.03 ]
G [ 0.02 0.03 0.05 0.09 0.09 -0.06 0.13 -0.01 0.00 0.16 0.05 -0.08 0.03 0.09 0.03 0.13 0.22 -0.03 0.07 0.03 0.01 0.12 0.04 0.00 0.02 0.03 0.02 ]
T [ -0.00 -0.00 0.00 -0.00 0.02 0.01 -0.02 0.00 0.17 -0.12 0.12 -0.01 -0.00 -0.03 0.05 -0.03 -0.06 0.17 -0.04 -0.05 0.09 -0.03 -0.06 -0.01 0.00 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3220

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 602

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 145

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 127

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 101

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 28

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages