Detailed information of deep learning profile BP000581.1

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This page shows detailed deep learning-derived predictions and motifs for REST in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000581.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BOT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.01 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.04 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.06 0.02 0.00 -0.00 ]
C [ -0.00 0.00 0.03 -0.00 0.18 -0.00 0.00 -0.00 0.22 0.20 -0.00 0.00 0.00 -0.00 0.00 0.01 0.16 0.00 -0.00 0.00 0.00 0.00 0.01 ]
G [ 0.05 0.04 -0.00 0.06 -0.00 0.00 0.11 -0.00 0.00 0.00 0.01 -0.00 0.12 0.21 0.00 0.04 0.00 0.00 0.10 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 0.00 0.16 -0.00 0.11 -0.00 -0.00 -0.01 0.02 -0.00 0.00 0.18 -0.01 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 684 645 655 621 726 647 644 677 605 590 506 519 530 623 713 474 238 877 504 23 21 134 101 8 6 1628 786 162 2 10 436 109 116 322 1682 1259 706 690 668 696 630 726 637 607 615 590 567 604 657 694 ]
C [ 775 784 763 708 699 742 700 690 696 661 774 813 989 777 320 96 539 1201 327 2637 9 356 47 2719 2722 219 222 24 6 21 650 2377 293 195 314 620 758 777 727 703 807 741 765 766 763 777 777 768 757 750 ]
G [ 754 736 711 757 756 788 869 914 747 958 762 853 636 672 1024 1879 1609 75 1511 16 13 2280 198 6 6 431 344 2525 2777 17 1475 160 103 2030 595 476 746 647 660 730 715 677 744 696 763 769 742 752 683 683 ]
T [ 578 626 662 705 610 614 578 510 743 582 749 606 636 719 734 342 405 638 449 115 2748 21 2445 58 57 513 1439 80 6 2743 230 145 2279 244 200 436 581 677 736 662 639 647 645 722 650 655 705 667 694 664 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 -0.00 0.02 -0.05 0.04 0.01 -0.06 -0.06 0.04 -0.00 -0.05 -0.10 0.08 0.03 0.02 -0.05 -0.05 0.04 -0.05 -0.08 -0.00 0.08 0.04 0.01 -0.01 -0.00 ]
C [ 0.02 0.03 0.02 0.02 -0.03 0.04 0.09 0.01 0.19 -0.02 0.05 -0.04 0.23 0.21 -0.00 0.04 0.03 -0.02 -0.02 0.06 0.17 0.04 -0.02 0.01 0.02 0.03 0.03 0.03 ]
G [ 0.03 0.03 0.03 0.05 0.08 0.08 -0.05 0.11 -0.05 -0.01 0.14 0.04 -0.08 0.02 0.08 0.01 0.13 0.21 -0.04 0.08 0.01 0.01 0.11 0.04 -0.01 0.02 0.02 0.03 ]
T [ -0.01 -0.00 0.00 0.00 -0.00 0.02 0.01 -0.01 0.02 0.16 -0.11 0.13 0.02 -0.00 -0.02 0.06 -0.04 -0.02 0.18 -0.05 -0.03 0.10 -0.01 -0.06 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1170

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1125

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 278

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 237

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 153

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 126

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages