Detailed information of deep learning profile BP000577.1

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This page shows detailed deep learning-derived predictions and motifs for REST in Panc1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000577.1
Cell line/tissue: Panc1
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BJO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.04 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.06 0.02 -0.00 -0.01 ]
C [ 0.00 -0.00 0.01 0.05 -0.00 0.20 -0.00 0.00 -0.00 0.24 0.22 -0.00 -0.00 0.00 0.00 0.00 0.01 0.18 0.00 -0.00 0.00 0.01 0.00 0.01 ]
G [ 0.01 0.06 0.04 -0.00 0.07 -0.00 0.00 0.14 -0.00 0.00 0.00 0.01 -0.00 0.13 0.23 -0.00 0.06 0.00 0.00 0.10 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.16 -0.00 0.11 -0.00 -0.00 -0.01 0.03 -0.00 -0.00 0.22 -0.01 -0.00 0.10 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 480 490 468 444 534 469 469 488 433 417 346 379 366 429 516 354 163 648 311 8 11 82 81 5 5 1185 502 95 0 5 273 52 48 195 1341 992 527 484 489 494 463 505 470 429 425 405 404 423 475 473 ]
C [ 617 646 604 574 564 590 574 553 558 541 638 667 810 610 249 72 441 969 248 2056 10 272 39 2091 2088 178 193 19 6 11 454 1895 219 138 249 526 619 654 610 588 656 586 639 639 660 660 628 619 620 631 ]
G [ 657 590 592 638 614 650 709 744 630 791 630 671 514 573 815 1489 1254 66 1264 15 10 1775 168 3 6 418 258 1980 2132 8 1254 115 74 1670 422 326 597 506 527 599 549 544 555 542 592 598 595 605 551 555 ]
T [ 388 416 478 486 430 433 390 357 521 393 528 425 452 530 562 227 284 459 319 63 2111 13 1854 43 43 361 1189 48 4 2118 161 80 1801 139 130 298 399 498 516 461 474 507 478 532 465 479 515 495 496 483 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.01 0.01 -0.05 0.04 0.02 -0.10 -0.12 0.03 -0.02 -0.04 -0.08 0.08 0.01 0.01 -0.03 -0.08 0.03 -0.07 -0.12 -0.01 0.08 0.04 0.00 -0.03 -0.02 ]
C [ 0.03 0.02 0.02 -0.02 0.05 0.12 -0.02 0.21 -0.02 0.05 -0.05 0.24 0.22 -0.01 0.04 0.04 -0.06 -0.01 0.06 0.19 0.05 -0.01 0.02 0.04 0.03 0.04 0.03 ]
G [ 0.03 0.03 0.05 0.08 0.08 -0.08 0.13 -0.05 0.03 0.17 0.04 -0.09 -0.01 0.09 0.00 0.14 0.23 -0.05 0.10 0.02 0.02 0.11 0.02 -0.02 0.02 0.03 0.04 ]
T [ -0.01 0.00 -0.01 0.00 0.00 0.01 -0.04 0.02 0.16 -0.15 0.12 -0.01 -0.04 -0.03 0.07 -0.04 -0.04 0.22 -0.08 -0.04 0.10 -0.02 -0.07 -0.01 -0.00 0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1112

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 173

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 102

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 50

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 21

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages