Detailed information of deep learning profile BP000577.1

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This page shows detailed deep learning-derived predictions and motifs for REST in Panc1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000577.1
Cell line/tissue: Panc1
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BJO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.10 -0.00 -0.01 0.22 -0.00 -0.00 0.03 -0.01 -0.00 -0.00 0.11 -0.00 0.16 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.10 0.00 0.00 0.06 -0.00 0.23 0.13 -0.00 0.01 0.00 0.00 -0.00 0.14 0.00 -0.00 0.07 -0.00 0.04 0.06 0.01 ]
G [ 0.01 0.00 0.01 0.00 -0.00 0.00 0.18 0.01 0.00 0.00 0.00 -0.00 -0.00 0.22 0.24 -0.00 0.00 -0.00 0.20 -0.00 0.05 0.01 -0.00 0.00 ]
T [ -0.01 -0.00 0.02 0.06 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.04 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 483 496 495 515 479 465 532 478 507 474 461 516 498 399 298 130 139 1801 80 161 2118 4 48 1189 361 43 43 1854 13 2111 63 319 459 284 227 562 530 452 425 528 393 521 357 390 433 430 486 478 416 388 ]
C [ 555 551 605 595 598 592 542 555 544 549 599 527 506 597 326 422 1670 74 115 1254 8 2132 1980 258 418 6 3 168 1775 10 15 1264 66 1254 1489 815 573 514 671 630 791 630 744 709 650 614 638 592 590 657 ]
G [ 631 620 619 628 660 660 639 639 586 656 588 610 654 619 526 249 138 219 1895 454 11 6 19 193 178 2088 2091 39 272 10 2056 248 969 441 72 249 610 810 667 638 541 558 553 574 590 564 574 604 646 617 ]
T [ 473 475 423 404 405 425 429 470 505 463 494 489 484 527 992 1341 195 48 52 273 5 0 95 502 1185 5 5 81 82 11 8 311 648 163 354 516 429 366 379 346 417 433 488 469 469 534 444 468 490 480 ]

Hypothetical CWM

   
A [ -0.01 0.01 -0.00 -0.01 -0.07 -0.02 0.10 -0.04 -0.08 0.22 -0.04 -0.04 0.07 -0.03 -0.04 -0.01 0.12 -0.15 0.16 0.02 -0.04 0.01 0.00 0.00 -0.01 0.00 -0.01 ]
C [ 0.04 0.03 0.02 -0.02 0.02 0.11 0.02 0.02 0.10 -0.05 0.23 0.14 0.00 0.09 -0.01 -0.09 0.04 0.17 0.03 -0.05 0.13 -0.08 0.08 0.08 0.05 0.03 0.03 ]
G [ 0.03 0.04 0.03 0.04 0.02 -0.01 0.05 0.19 0.06 -0.01 -0.06 0.04 0.04 -0.01 0.22 0.24 -0.05 0.05 -0.02 0.21 -0.02 0.12 0.05 -0.02 0.02 0.02 0.03 ]
T [ -0.02 -0.03 0.00 0.04 0.08 -0.01 -0.12 -0.07 0.03 -0.08 -0.03 0.01 0.01 0.08 -0.08 -0.04 -0.02 0.03 -0.12 -0.10 0.02 0.04 -0.05 0.01 -0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1112

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 173

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 102

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 50

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 21

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages