Detailed information of deep learning profile BP000575.1

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This page shows detailed deep learning-derived predictions and motifs for REST in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000575.1
Cell line/tissue: SK-N-SH
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BJJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.06 0.02 -0.00 -0.01 -0.01 ]
C [ 0.00 -0.00 0.01 0.03 -0.00 0.18 -0.00 -0.00 -0.00 0.21 0.20 -0.00 -0.00 -0.00 0.00 0.00 0.01 0.18 0.00 -0.00 -0.00 0.00 0.00 0.01 0.00 ]
G [ 0.02 0.05 0.03 -0.00 0.06 -0.00 0.00 0.11 -0.00 0.00 0.00 0.01 -0.00 0.11 0.20 0.00 0.05 0.00 0.00 0.11 0.00 -0.00 -0.00 0.00 0.01 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.14 -0.00 0.09 -0.00 -0.00 -0.01 0.02 -0.00 -0.00 0.19 -0.00 -0.00 0.10 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 365 350 342 322 394 346 368 359 311 327 261 270 264 297 350 260 118 439 240 9 2 87 46 3 2 818 332 57 1 1 168 8 10 90 1125 828 418 361 374 354 347 383 319 287 289 279 278 308 339 351 ]
C [ 441 462 419 405 380 405 394 390 403 375 468 461 568 411 187 34 295 708 166 1479 5 216 13 1508 1498 118 140 8 2 2 312 1491 38 29 122 342 458 476 426 411 476 401 444 480 468 474 449 433 420 423 ]
G [ 445 417 418 446 427 471 492 545 441 529 417 501 360 408 591 1060 908 36 886 4 5 1222 95 4 0 343 174 1444 1531 1 965 18 10 1358 242 172 364 327 354 398 374 366 407 361 411 430 407 409 390 390 ]
T [ 284 306 356 362 334 313 281 241 380 304 389 303 343 419 407 181 214 352 243 43 1523 10 1381 20 35 256 889 26 1 1531 90 18 1477 58 46 193 295 371 381 372 338 385 365 407 367 352 401 385 386 371 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.01 0.01 -0.04 0.04 0.01 -0.05 -0.05 0.03 -0.01 -0.04 -0.09 0.06 0.00 0.02 -0.04 -0.08 0.02 -0.07 -0.07 0.00 0.08 0.03 0.01 -0.03 -0.02 ]
C [ 0.01 0.03 0.01 0.02 -0.03 0.05 0.09 -0.00 0.18 -0.03 0.01 -0.05 0.21 0.21 -0.00 0.03 0.01 -0.05 -0.01 0.05 0.18 0.02 -0.04 0.00 0.03 0.02 0.03 0.03 ]
G [ 0.03 0.02 0.02 0.05 0.07 0.05 -0.08 0.10 -0.05 -0.01 0.14 0.03 -0.06 0.01 0.09 0.02 0.12 0.20 -0.05 0.09 0.02 0.01 0.12 0.02 -0.03 0.01 0.01 0.03 ]
T [ -0.02 -0.02 -0.00 -0.01 -0.00 0.01 0.01 -0.03 -0.00 0.14 -0.09 0.11 -0.02 -0.02 -0.02 0.06 -0.03 -0.03 0.19 -0.06 -0.04 0.10 -0.02 -0.06 0.00 0.00 0.02 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 665

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 218

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 145

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 136

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 50

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages