Detailed information of deep learning profile BP000575.1

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This page shows detailed deep learning-derived predictions and motifs for REST in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000575.1
Cell line/tissue: SK-N-SH
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BJJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.10 -0.00 -0.00 0.19 -0.00 -0.00 0.02 -0.01 -0.00 -0.00 0.09 -0.00 0.14 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.01 0.00 -0.00 -0.00 0.00 0.11 0.00 0.00 0.05 0.00 0.20 0.11 -0.00 0.01 0.00 0.00 -0.00 0.11 0.00 -0.00 0.06 -0.00 0.03 0.05 0.02 ]
G [ 0.00 0.01 0.00 0.00 -0.00 -0.00 0.00 0.18 0.01 0.00 0.00 -0.00 -0.00 -0.00 0.20 0.21 -0.00 -0.00 -0.00 0.18 -0.00 0.03 0.01 -0.00 0.00 ]
T [ -0.01 -0.01 -0.00 0.02 0.06 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 371 386 385 401 352 367 407 365 385 338 372 381 371 295 193 46 58 1477 18 90 1531 1 26 889 256 35 20 1381 10 1523 43 243 352 214 181 407 419 343 303 389 304 380 241 281 313 334 362 356 306 284 ]
C [ 390 390 409 407 430 411 361 407 366 374 398 354 327 364 172 242 1358 10 18 965 1 1531 1444 174 343 0 4 95 1222 5 4 886 36 908 1060 591 408 360 501 417 529 441 545 492 471 427 446 418 417 445 ]
G [ 423 420 433 449 474 468 480 444 401 476 411 426 476 458 342 122 29 38 1491 312 2 2 8 140 118 1498 1508 13 216 5 1479 166 708 295 34 187 411 568 461 468 375 403 390 394 405 380 405 419 462 441 ]
T [ 351 339 308 278 279 289 287 319 383 347 354 374 361 418 828 1125 90 10 8 168 1 1 57 332 818 2 3 46 87 2 9 240 439 118 260 350 297 264 270 261 327 311 359 368 346 394 322 342 350 365 ]

Hypothetical CWM

   
A [ -0.01 0.02 0.00 0.00 -0.06 -0.02 0.10 -0.04 -0.06 0.19 -0.03 -0.03 0.06 -0.02 -0.02 -0.02 0.11 -0.09 0.14 -0.00 -0.03 0.01 0.01 -0.00 -0.01 -0.00 -0.02 -0.02 ]
C [ 0.03 0.01 0.01 -0.03 0.02 0.12 0.01 0.02 0.09 -0.05 0.20 0.12 0.02 0.09 0.01 -0.06 0.03 0.14 -0.01 -0.05 0.10 -0.08 0.05 0.07 0.05 0.02 0.02 0.03 ]
G [ 0.03 0.03 0.02 0.03 0.00 -0.04 0.02 0.18 0.05 -0.01 -0.05 0.01 0.03 -0.00 0.21 0.21 -0.05 0.01 -0.03 0.18 -0.00 0.09 0.05 -0.03 0.02 0.01 0.03 0.01 ]
T [ -0.02 -0.03 0.01 0.03 0.08 0.00 -0.07 -0.07 0.02 -0.08 -0.04 0.02 0.00 0.06 -0.09 -0.04 -0.01 0.03 -0.05 -0.05 0.01 0.04 -0.04 0.01 -0.01 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 665

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 218

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 145

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 136

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 50

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages