Detailed information of deep learning profile BP000572.1

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This page shows detailed deep learning-derived predictions and motifs for REST in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000572.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000ATM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.05 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.08 0.03 0.00 -0.00 ]
C [ -0.00 0.00 0.05 -0.00 0.25 -0.00 0.00 -0.00 0.32 0.28 -0.00 -0.00 0.00 0.00 0.00 0.01 0.21 0.00 -0.00 -0.00 0.00 0.01 0.01 ]
G [ 0.07 0.05 -0.00 0.07 -0.00 0.00 0.13 -0.00 0.00 0.00 0.01 -0.00 0.15 0.29 0.00 0.04 0.00 0.00 0.14 0.01 -0.00 0.00 -0.00 ]
T [ -0.00 0.00 -0.00 -0.01 -0.00 0.18 -0.00 0.14 -0.00 -0.00 -0.01 0.02 -0.00 0.00 0.24 -0.01 -0.00 0.13 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 719 707 665 660 792 674 688 706 653 615 553 556 543 666 792 488 257 894 553 32 26 160 105 10 12 1692 838 161 9 12 502 100 103 344 1735 1293 744 717 701 722 657 783 687 630 644 636 588 639 694 749 ]
C [ 833 821 811 735 730 784 744 742 727 716 810 851 1036 832 342 119 563 1280 363 2781 25 442 56 2865 2851 229 227 35 14 14 714 2528 308 186 355 685 794 817 771 747 851 753 815 833 819 798 809 784 795 791 ]
G [ 773 766 751 826 803 837 894 952 762 1017 801 878 687 720 1024 1958 1690 94 1561 17 27 2297 227 4 10 477 379 2657 2911 14 1485 166 112 2146 641 480 797 682 685 776 737 714 766 721 785 798 762 805 707 719 ]
T [ 618 649 716 722 618 648 617 543 801 595 779 658 677 725 785 378 433 675 466 113 2865 44 2555 64 70 545 1499 90 9 2903 242 149 2420 267 212 485 608 727 786 698 698 693 675 759 695 711 784 715 747 684 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 0.03 -0.05 0.06 0.01 -0.11 -0.09 0.04 -0.02 -0.08 -0.11 0.09 0.04 0.04 -0.06 -0.08 0.05 -0.07 -0.13 -0.00 0.11 0.06 0.02 0.00 -0.01 ]
C [ 0.02 0.03 0.02 0.01 -0.05 0.05 0.13 0.01 0.26 -0.02 0.06 -0.05 0.33 0.28 -0.01 0.04 0.02 -0.05 -0.04 0.09 0.22 0.07 -0.04 0.01 0.03 0.04 0.04 0.04 ]
G [ 0.03 0.02 0.02 0.06 0.11 0.09 -0.11 0.14 -0.06 0.03 0.17 0.05 -0.18 -0.02 0.10 0.04 0.17 0.29 -0.03 0.09 0.03 0.02 0.16 0.06 -0.02 0.03 0.02 0.04 ]
T [ -0.00 0.01 0.01 0.00 -0.01 0.03 0.02 -0.03 0.01 0.19 -0.14 0.17 0.02 -0.02 -0.02 0.06 -0.06 -0.05 0.24 -0.06 -0.06 0.14 -0.01 -0.08 0.01 0.01 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2285

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1687

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 576

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 209

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 148

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages