Detailed information of deep learning profile BP000572.1

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This page shows detailed deep learning-derived predictions and motifs for REST in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000572.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000ATM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.13 -0.00 -0.01 0.24 0.00 -0.00 0.02 -0.01 -0.00 -0.00 0.14 -0.00 0.18 -0.00 -0.01 -0.00 0.00 -0.00 ]
C [ -0.00 0.00 -0.00 0.01 0.14 0.00 0.00 0.04 0.00 0.29 0.15 -0.00 0.01 0.00 0.00 -0.00 0.13 0.00 -0.00 0.07 -0.00 0.05 0.07 ]
G [ 0.01 0.01 0.00 -0.00 -0.00 0.00 0.21 0.01 0.00 0.00 0.00 -0.00 -0.00 0.28 0.32 -0.00 0.00 -0.00 0.25 -0.00 0.05 0.00 -0.00 ]
T [ -0.00 0.00 0.03 0.08 -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.05 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 684 747 715 784 711 695 759 675 693 698 698 786 727 608 485 212 267 2420 149 242 2903 9 90 1499 545 70 64 2555 44 2865 113 466 675 433 378 785 725 677 658 779 595 801 543 617 648 618 722 716 649 618 ]
C [ 719 707 805 762 798 785 721 766 714 737 776 685 682 797 480 641 2146 112 166 1485 14 2911 2657 379 477 10 4 227 2297 27 17 1561 94 1690 1958 1024 720 687 878 801 1017 762 952 894 837 803 826 751 766 773 ]
G [ 791 795 784 809 798 819 833 815 753 851 747 771 817 794 685 355 186 308 2528 714 14 14 35 227 229 2851 2865 56 442 25 2781 363 1280 563 119 342 832 1036 851 810 716 727 742 744 784 730 735 811 821 833 ]
T [ 749 694 639 588 636 644 630 687 783 657 722 701 717 744 1293 1735 344 103 100 502 12 9 161 838 1692 12 10 105 160 26 32 553 894 257 488 792 666 543 556 553 615 653 706 688 674 792 660 665 707 719 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.01 0.01 -0.08 -0.01 0.14 -0.06 -0.06 0.24 -0.05 -0.06 0.06 -0.02 -0.02 0.02 0.17 -0.14 0.19 0.01 -0.03 0.02 0.03 -0.01 0.00 0.01 0.01 -0.00 ]
C [ 0.04 0.02 0.03 -0.02 0.06 0.16 0.02 0.03 0.09 -0.03 0.29 0.17 0.04 0.10 -0.02 -0.18 0.05 0.17 0.03 -0.06 0.14 -0.11 0.09 0.11 0.06 0.02 0.02 0.03 ]
G [ 0.04 0.04 0.04 0.03 0.01 -0.04 0.07 0.22 0.09 -0.04 -0.05 0.02 0.04 -0.01 0.28 0.33 -0.05 0.06 -0.02 0.26 0.01 0.13 0.05 -0.05 0.01 0.02 0.03 0.02 ]
T [ -0.01 0.00 0.02 0.06 0.11 -0.00 -0.13 -0.07 0.05 -0.08 -0.06 0.04 0.04 0.09 -0.11 -0.08 -0.02 0.04 -0.09 -0.11 0.01 0.06 -0.05 0.03 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2285

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1687

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 576

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 209

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 148

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages