Detailed information of deep learning profile BP000544.1

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This page shows detailed deep learning-derived predictions and motifs for CEBPB in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CEBPB
Model ID: BP000544.1
Cell line/tissue: HepG2
Class: Basic leucine zipper factors (bZIP)
Family: CEBP-related
JASPAR ID: MA0466.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P17676  
Source: ENCSR000BQI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 0.00 0.11 0.11 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 0.00 0.00 0.01 0.01 0.00 0.00 ]
G [ 0.01 0.00 0.00 0.01 0.00 0.01 0.02 -0.00 0.09 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 0.10 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.02 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 5516 6420 5408 5355 5350 7574 5229 5614 5106 5517 5375 5293 7480 5574 5253 5853 5169 6918 8808 56 105 6968 3180 222 3313 22139 22299 656 6717 5748 4003 5753 5210 4670 5292 5179 7862 5016 5272 5182 5258 7778 6924 5166 5236 5249 5381 5503 6898 5751 ]
C [ 6033 4777 6613 6915 7026 4423 4684 4457 7316 4796 4488 4626 4899 4956 4693 3816 6899 2759 3223 107 39 213 5726 86 16510 182 8 6040 8689 5213 7066 5046 4730 7635 4819 7176 4614 6834 4680 4805 7073 4782 4736 6862 6950 4742 6422 5646 4590 6558 ]
G [ 4450 5736 4845 4655 4655 5026 7127 7093 4641 4448 7006 7189 5201 7106 5061 8382 5652 6595 9551 51 9130 10345 2626 21890 6 4 8 3141 3153 4593 4266 5899 7387 4934 4561 4637 4656 4939 4598 7080 4553 4609 5483 4779 4643 4638 4607 5620 5744 4961 ]
T [ 6332 5398 5465 5406 5300 5308 5291 5167 5268 7570 5462 5223 4751 4695 7324 4280 4611 6059 749 22117 13057 4805 10799 133 2502 6 16 12494 3772 6777 6996 5633 5004 5092 7659 5339 5199 5542 7781 5264 5447 5162 5188 5524 5502 7702 5921 5562 5099 5061 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 0.04 -0.06 -0.06 0.03 -0.02 -0.01 0.02 0.11 0.11 -0.05 0.02 -0.00 -0.01 -0.01 ]
C [ 0.01 0.01 0.02 0.00 0.00 -0.02 -0.06 -0.07 0.08 -0.02 0.07 0.01 -0.05 0.04 0.02 0.02 0.02 0.02 ]
G [ 0.01 0.02 0.02 0.03 0.04 -0.04 0.04 0.04 -0.02 0.09 -0.10 -0.05 -0.03 0.00 0.00 0.02 0.01 0.01 ]
T [ -0.00 -0.01 -0.00 0.01 -0.04 0.10 0.07 0.03 0.01 -0.01 0.02 -0.08 -0.05 0.04 -0.01 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2615

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1846

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1453

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 858

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 441

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 440

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 152

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 119

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 67

CWM

PFM

     

HCWM

27 profiles found for the same TF (CEBPB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000545.1 CEBPB ENCSR000BRQ K562 Homo sapiens MA0466.4
BP000546.1 CEBPB ENCSR000BRX GM12878 Homo sapiens MA0466.4
BP000547.1 CEBPB ENCSR000BSD HCT116 Homo sapiens MA0466.4
BP000548.1 CEBPB ENCSR000BSR MCF-7 Homo sapiens MA0466.4
BP000549.1 CEBPB ENCSR000BTT Ishikawa Homo sapiens MA0466.4
BP000550.1 CEBPB ENCSR000BUB A549 Homo sapiens MA0466.4
BP000551.1 CEBPB ENCSR000DYI A549 Homo sapiens MA0466.4
BP000552.1 CEBPB ENCSR000EBV H1 Homo sapiens MA0466.4
BP000553.1 CEBPB ENCSR000EDA HeLa-S3 Homo sapiens MA0466.4
BP000554.1 CEBPB ENCSR000EEE HepG2 Homo sapiens MA0466.4
Showing 10 profiles of page 1 from 3 pages