Detailed information of deep learning profile BP000531.1

This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000531.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR385RUW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 -0.00 0.01 -0.00 0.01 0.05 -0.00 0.03 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.03 0.00 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.00 0.05 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.07 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.01 0.00 -0.00 0.02 0.00 0.04 0.00 -0.00 0.01 -0.00 0.00 0.00 ]

Frequency matrix

A [ 1621 1679 1672 1621 1698 1654 1705 1628 1706 1651 1726 1632 1618 1577 1621 1979 1813 3133 72 3014 5990 1 5033 937 1783 1348 1250 13 555 1525 1031 1120 1422 1567 1460 1672 1609 1631 1727 1713 1798 1678 1645 1679 1612 1673 1652 1760 1738 1674 ]
C [ 1405 1346 1398 1367 1264 1409 1392 1467 1463 1386 1335 1420 1296 1189 1652 1635 1467 77 4 540 3 6060 75 1492 1150 2154 418 14 293 1419 3745 2181 1503 1054 1405 1395 1473 1555 1431 1302 1202 1245 1371 1351 1364 1358 1350 1366 1314 1335 ]
G [ 1363 1362 1379 1369 1345 1341 1332 1296 1301 1278 1346 1364 1522 1544 1237 814 1359 1964 5940 972 18 0 400 1213 1019 1414 265 6030 245 1100 115 311 1210 1397 1330 1226 1263 1280 1258 1324 1420 1442 1336 1400 1302 1378 1309 1338 1395 1369 ]
T [ 1672 1674 1612 1704 1754 1657 1632 1670 1591 1746 1654 1645 1625 1751 1551 1633 1422 887 45 1535 50 0 553 2419 2109 1145 4128 4 4968 2017 1170 2449 1926 2043 1866 1768 1716 1595 1645 1722 1641 1696 1709 1631 1783 1652 1750 1597 1614 1683 ]

Hypothetical CWM

A [ -0.00 0.00 0.00 -0.00 0.02 -0.00 0.01 0.05 -0.05 0.03 -0.00 0.01 0.01 -0.01 -0.01 -0.01 0.01 -0.01 -0.01 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.01 -0.01 -0.04 -0.01 -0.03 0.08 -0.04 0.01 -0.00 0.01 0.02 -0.02 -0.02 -0.00 0.05 0.01 0.01 -0.00 0.00 0.00 ]
G [ 0.01 0.00 -0.01 0.01 0.02 0.05 -0.00 -0.02 -0.02 0.02 -0.00 -0.00 0.01 -0.03 0.07 -0.03 -0.01 -0.04 -0.01 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.01 -0.01 0.01 0.01 -0.00 0.03 -0.04 0.05 0.01 -0.00 0.01 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3292

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3229

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1137

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1043

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1001

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 886

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 206

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 186

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000525.1 NR3C1 ENCSR000BHG A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
BP000533.1 NR3C1 ENCSR458VTP A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages