Detailed information of deep learning profile BP000525.1

This page shows detailed deep learning-derived predictions and motifs for NR3C1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR3C1
Model ID: BP000525.1
Cell line/tissue: A549
Class: Nuclear receptors with C4 zinc fingers
Family: Steroid hormone receptors (NR3)
JASPAR ID: MA0113.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P04150  
Source: ENCSR000BHG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ -0.00 0.00 -0.00 0.01 0.00 0.01 0.07 0.00 0.04 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.11 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.05 0.01 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 0.07 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.09 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.01 0.00 -0.00 0.02 -0.00 0.05 0.00 -0.00 0.00 -0.00 0.00 -0.00 ]

Frequency matrix

A [ 1613 1489 1490 1537 1477 1501 1472 1498 1502 1544 1546 1593 1500 1488 1375 1402 1871 1727 2868 146 2926 5773 0 5064 830 1679 1189 1326 174 447 1167 687 986 1283 1527 1328 1419 1532 1473 1580 1519 1603 1568 1445 1525 1496 1546 1537 1569 1538 ]
C [ 1336 1381 1407 1435 1383 1386 1485 1434 1518 1476 1481 1346 1333 1290 1277 1832 1783 1355 71 5 605 4 5840 30 1418 1123 2253 664 133 271 1538 4123 2294 1588 1181 1458 1514 1515 1575 1439 1405 1314 1336 1402 1371 1430 1396 1378 1356 1361 ]
G [ 1368 1465 1404 1382 1395 1421 1350 1326 1324 1356 1303 1395 1487 1523 1687 1294 841 1458 2192 5632 1134 15 1 404 1179 1032 1504 319 5516 261 1105 122 262 1265 1435 1476 1436 1351 1358 1308 1384 1438 1462 1428 1433 1377 1394 1390 1442 1432 ]
T [ 1528 1510 1544 1491 1590 1537 1538 1587 1501 1469 1515 1511 1525 1544 1506 1317 1350 1305 714 62 1180 53 4 347 2418 2011 899 3536 22 4866 2035 913 2303 1709 1702 1583 1476 1447 1439 1518 1537 1490 1479 1570 1516 1542 1509 1540 1478 1514 ]

Hypothetical CWM

A [ -0.01 -0.00 0.01 0.00 0.02 -0.00 0.02 0.07 -0.06 0.04 -0.00 0.01 0.01 -0.01 -0.01 -0.01 0.01 -0.01 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.01 0.01 0.02 0.01 -0.01 -0.04 -0.01 -0.03 0.11 -0.04 0.02 0.01 0.01 0.03 -0.02 -0.01 0.01 0.06 0.02 0.01 0.00 0.01 ]
G [ 0.01 0.01 -0.00 0.01 0.02 0.07 0.01 -0.02 -0.03 0.04 0.00 0.01 0.02 -0.03 0.09 -0.02 -0.00 -0.04 -0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.01 0.01 -0.01 0.00 -0.01 0.02 0.01 -0.00 0.04 -0.05 0.06 0.01 -0.00 0.01 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4404

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2025

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 583

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 493

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 379

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 312

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 231

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 73

20 profiles found for the same TF (NR3C1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000523.1 NR3C1 ENCSR000BHE A549 Homo sapiens MA0113.4
BP000524.1 NR3C1 ENCSR000BHF A549 Homo sapiens MA0113.4
BP000526.1 NR3C1 ENCSR000BJC Ishikawa Homo sapiens MA0113.4
BP000527.1 NR3C1 ENCSR000BJR A549 Homo sapiens MA0113.4
BP000528.1 NR3C1 ENCSR070VXO A549 Homo sapiens MA0113.4
BP000529.1 NR3C1 ENCSR255CTA A549 Homo sapiens MA0113.4
BP000530.1 NR3C1 ENCSR287FWE A549 Homo sapiens MA0113.4
BP000531.1 NR3C1 ENCSR385RUW A549 Homo sapiens MA0113.4
BP000532.1 NR3C1 ENCSR424JOE A549 Homo sapiens MA0113.4
BP000533.1 NR3C1 ENCSR458VTP A549 Homo sapiens MA0113.4
Showing 10 profiles of page 1 from 2 pages