Detailed information of deep learning profile BP000447.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in WTC11 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000447.1
Cell line/tissue: WTC11
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR992XTY
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.14 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.15 0.06 0.05 0.14 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3727 3240 3025 4790 6065 4219 3014 3937 3100 3502 4095 4237 4456 4413 3871 2517 3638 4924 1722 564 11212 1269 2794 14032 237 6081 1050 310 586 2700 6485 1766 2480 6033 3065 5013 3690 4286 3919 3726 4406 5585 3695 4235 4639 4784 4469 4462 4313 4344 ]
C [ 3725 2714 4261 5160 3400 3094 2599 4059 6893 5841 5239 4700 4258 3764 4394 5245 3498 1714 12781 15769 1018 9251 6217 375 56 107 481 146 909 11562 1177 8480 5460 3911 3238 3050 3062 4523 5228 6127 5121 3414 4464 3820 3668 3814 3855 3905 4216 4205 ]
G [ 4263 5998 5649 2863 3912 3794 3688 3599 2602 2850 3654 3813 3521 3343 3929 2591 5512 6971 1140 228 2065 5663 1224 1374 16369 10387 9810 16053 13945 849 8051 4660 1635 4690 4260 3506 6878 4389 4265 2547 2886 4349 4371 4510 4314 3666 3797 4538 4469 4241 ]
T [ 5071 4834 3851 3973 3409 5679 7485 5191 4191 4593 3798 4036 4551 5266 4592 6433 4138 3177 1143 225 2491 603 6551 1005 124 211 5445 277 1346 1675 1073 1880 7211 2152 6223 5217 3156 3588 3374 4386 4373 3438 4256 4221 4165 4522 4665 3881 3788 3996 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.08 -0.05 0.03 -0.05 -0.05 -0.04 -0.02 0.01 -0.02 -0.02 0.02 -0.02 0.01 -0.01 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.02 0.10 0.14 -0.02 0.09 0.04 -0.01 -0.02 -0.05 0.00 -0.03 -0.03 0.11 -0.02 0.06 0.03 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.01 0.03 0.04 -0.02 -0.01 0.06 0.04 -0.03 0.01 0.15 0.11 0.08 0.14 0.11 -0.02 0.11 0.04 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.00 -0.01 -0.03 -0.06 -0.03 -0.05 0.05 -0.04 -0.04 -0.07 0.01 -0.04 0.00 -0.03 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages