Detailed information of deep learning profile BP000447.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in WTC11 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000447.1
Cell line/tissue: WTC11
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR992XTY
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.09 0.14 0.05 0.06 0.15 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.14 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3996 3788 3881 4665 4522 4165 4221 4256 3438 4373 4386 3374 3588 3156 5217 6223 2152 7211 1880 1073 1675 1346 277 5445 211 124 1005 6551 603 2491 225 1143 3177 4138 6433 4592 5266 4551 4036 3798 4593 4191 5191 7485 5679 3409 3973 3851 4834 5071 ]
C [ 4241 4469 4538 3797 3666 4314 4510 4371 4349 2886 2547 4265 4389 6878 3506 4260 4690 1635 4660 8051 849 13945 16053 9810 10387 16369 1374 1224 5663 2065 228 1140 6971 5512 2591 3929 3343 3521 3813 3654 2850 2602 3599 3688 3794 3912 2863 5649 5998 4263 ]
G [ 4205 4216 3905 3855 3814 3668 3820 4464 3414 5121 6127 5228 4523 3062 3050 3238 3911 5460 8480 1177 11562 909 146 481 107 56 375 6217 9251 1018 15769 12781 1714 3498 5245 4394 3764 4258 4700 5239 5841 6893 4059 2599 3094 3400 5160 4261 2714 3725 ]
T [ 4344 4313 4462 4469 4784 4639 4235 3695 5585 4406 3726 3919 4286 3690 5013 3065 6033 2480 1766 6485 2700 586 310 1050 6081 237 14032 2794 1269 11212 564 1722 4924 3638 2517 3871 4413 4456 4237 4095 3502 3100 3937 3014 4219 6065 4790 3025 3240 3727 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.03 0.00 -0.04 0.01 -0.07 -0.04 -0.04 0.05 -0.05 -0.03 -0.06 -0.03 -0.01 -0.00 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.04 0.11 -0.02 0.11 0.14 0.08 0.11 0.15 0.01 -0.03 0.04 0.06 -0.01 -0.02 0.04 0.03 -0.01 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.03 0.06 -0.02 0.11 -0.03 -0.03 0.00 -0.05 -0.02 -0.01 0.04 0.09 -0.02 0.14 0.10 -0.02 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.02 0.01 -0.02 -0.04 -0.05 -0.05 0.03 -0.05 0.08 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages