Detailed information of deep learning profile BP000446.1

  1. Home
  2. Deep Learning Profile > BP000446.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in GM23338 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000446.1
Cell line/tissue: GM23338
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR987GXT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.06 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.12 0.00 0.03 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.07 0.04 0.14 0.10 -0.00 0.06 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 2803 3512 4044 3463 2900 3288 2668 2963 3164 3314 3217 3324 3262 2310 3098 3580 2022 1279 6595 1836 2442 10107 293 4439 1794 217 254 2190 4782 1463 2093 4832 2251 3788 2713 3442 3133 3000 3337 3829 3079 3510 3532 3561 3414 3431 3327 3445 3400 3323 ]
C [ 3465 3856 3297 3072 2807 3429 4855 4528 4074 3807 3622 3572 3769 4395 3202 2072 8749 11239 1657 5630 5123 432 69 128 502 60 377 9570 880 6956 4616 3162 3108 2816 2902 3712 3951 4794 4048 3266 3670 3315 3351 3475 3597 3327 3397 3385 3330 3499 ]
G [ 4376 3214 3401 3372 3534 3215 2788 2960 3220 3336 3557 3094 3388 2791 4029 5407 1681 728 2383 5350 1853 1774 13147 8891 7160 13260 12206 610 7180 3785 1494 4052 3705 2966 5468 3634 4025 2792 2938 3586 3749 3662 3758 3402 3410 3731 3955 3697 3762 3654 ]
T [ 3065 3127 2967 3802 4468 3777 3398 3258 3251 3252 3313 3719 3290 4213 3380 2650 1257 463 3074 893 4291 1396 200 251 4253 172 872 1339 867 1505 5506 1663 4645 4139 2626 2921 2600 3123 3386 3028 3211 3222 3068 3271 3288 3220 3030 3182 3217 3233 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.03 0.00 0.00 0.08 -0.03 0.03 -0.03 -0.04 -0.04 -0.01 0.02 -0.02 -0.01 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.03 0.02 -0.02 0.09 0.14 -0.00 0.08 0.04 -0.00 -0.03 -0.06 -0.01 -0.03 -0.03 0.11 -0.02 0.06 0.03 0.02 0.01 0.00 0.01 0.01 ]
G [ 0.00 0.00 -0.01 0.02 0.04 -0.02 -0.03 0.06 0.04 -0.01 0.03 0.15 0.12 0.09 0.14 0.11 -0.02 0.11 0.03 -0.01 0.02 0.01 -0.00 0.03 0.01 ]
T [ 0.01 0.01 0.01 -0.00 -0.01 -0.02 -0.05 -0.00 -0.03 0.05 -0.01 -0.03 -0.05 0.02 -0.03 0.01 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5585

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 80

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages