Detailed information of deep learning profile BP000446.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM23338 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000446.1
Cell line/tissue: GM23338
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR987GXT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.06 -0.00 0.10 0.14 0.04 0.07 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.03 0.00 0.12 0.06 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.06 -0.00 -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3233 3217 3182 3030 3220 3288 3271 3068 3222 3211 3028 3386 3123 2600 2921 2626 4139 4645 1663 5506 1505 867 1339 872 172 4253 251 200 1396 4291 893 3074 463 1257 2650 3380 4213 3290 3719 3313 3252 3251 3258 3398 3777 4468 3802 2967 3127 3065 ]
C [ 3654 3762 3697 3955 3731 3410 3402 3758 3662 3749 3586 2938 2792 4025 3634 5468 2966 3705 4052 1494 3785 7180 610 12206 13260 7160 8891 13147 1774 1853 5350 2383 728 1681 5407 4029 2791 3388 3094 3557 3336 3220 2960 2788 3215 3534 3372 3401 3214 4376 ]
G [ 3499 3330 3385 3397 3327 3597 3475 3351 3315 3670 3266 4048 4794 3951 3712 2902 2816 3108 3162 4616 6956 880 9570 377 60 502 128 69 432 5123 5630 1657 11239 8749 2072 3202 4395 3769 3572 3622 3807 4074 4528 4855 3429 2807 3072 3297 3856 3465 ]
T [ 3323 3400 3445 3327 3431 3414 3561 3532 3510 3079 3829 3337 3000 3133 3442 2713 3788 2251 4832 2093 1463 4782 2190 254 217 1794 4439 293 10107 2442 1836 6595 1279 2022 3580 3098 2310 3262 3324 3217 3314 3164 2963 2668 3288 2900 3463 4044 3512 2803 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.01 -0.03 0.02 -0.05 -0.03 -0.01 0.05 -0.03 -0.00 -0.05 -0.02 -0.01 -0.00 0.01 0.01 0.01 ]
C [ 0.01 0.03 -0.00 0.01 0.02 -0.01 0.03 0.11 -0.02 0.11 0.14 0.09 0.12 0.15 0.03 -0.01 0.04 0.06 -0.03 -0.02 0.04 0.02 -0.01 0.00 0.00 ]
G [ 0.01 0.01 0.00 0.01 0.02 0.03 0.06 -0.02 0.11 -0.03 -0.03 -0.01 -0.06 -0.03 -0.00 0.04 0.08 -0.00 0.14 0.09 -0.02 0.02 0.03 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.01 -0.02 0.02 -0.01 -0.04 -0.04 -0.03 0.03 -0.03 0.08 0.00 0.00 0.03 -0.02 -0.01 0.02 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5585

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 80

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages