Detailed information of deep learning profile BP000441.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in upper lobe of left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000441.1
Cell line/tissue: upper lobe of left lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR972LYL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 -0.00 0.05 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.04 0.13 0.09 -0.00 0.04 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4372 3801 3647 5331 6775 4807 3647 4367 3580 4125 4643 4884 4988 5012 4323 2780 4313 5373 1837 605 12575 1263 3038 15518 247 7325 1341 478 717 3162 7627 2069 2922 6726 3602 5717 4272 4795 4475 4126 5002 6086 4015 4820 5090 5412 5141 4966 4966 4965 ]
C [ 4381 3356 4865 5933 3955 3732 3180 4633 7759 6559 5781 5284 4869 4348 5029 6295 3986 2172 14730 18192 896 10652 7170 501 115 228 936 334 1274 12875 1506 9061 6115 4639 3868 3579 3362 5112 6208 7116 5870 3977 5200 4408 4387 4361 4348 4605 4806 4850 ]
G [ 4823 6486 6333 3491 4471 4539 4007 4257 2982 3366 4213 4360 4246 3906 4616 2835 6178 8020 1260 174 2877 6599 1515 1873 18602 11325 10348 17917 15485 1160 8776 5843 2287 5437 5004 4248 7850 5163 4569 2959 3265 4965 5153 5173 4884 4281 4376 5118 5045 4953 ]
T [ 5546 5479 4277 4367 3921 6044 8288 5865 4801 5072 4485 4594 5019 5856 5154 7212 4645 3557 1295 151 2774 608 7399 1230 158 244 6497 393 1646 1925 1213 2149 7798 2320 6648 5578 3638 4052 3870 4921 4985 4094 4754 4721 4761 5068 5257 4433 4305 4354 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.01 0.01 -0.01 -0.02 0.03 -0.02 -0.02 0.07 -0.04 0.04 -0.05 -0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.10 0.16 -0.02 0.10 0.05 -0.00 -0.02 -0.05 0.00 -0.03 -0.03 0.10 -0.02 0.05 0.03 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.01 0.01 0.00 0.01 -0.00 0.03 0.04 -0.02 -0.02 0.07 0.04 -0.01 0.02 0.15 0.11 0.08 0.14 0.10 -0.02 0.10 0.04 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.01 -0.03 -0.07 -0.03 -0.05 0.05 -0.03 -0.04 -0.06 0.02 -0.03 0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 252

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 149

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 24

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages