Detailed information of deep learning profile BP000440.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in upper lobe of left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000440.1
Cell line/tissue: upper lobe of left lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR970UZD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.12 -0.00 0.04 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.05 -0.00 0.01 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.11 0.04 0.03 0.09 0.06 -0.00 0.03 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 3661 3082 2815 4850 6679 4300 2900 4043 2852 3375 4220 4425 4613 4694 4023 2216 3594 4884 1499 349 11990 872 2734 14809 247 6375 1122 492 784 2693 6774 1993 2591 6186 3165 5188 3795 4375 4198 3591 4567 5820 3590 4378 4642 5025 4552 4436 4462 4387 ]
C [ 4554 3082 4755 6184 3695 3508 2856 4478 8318 6961 5999 5353 4883 4180 4672 6157 3909 1956 14472 17383 856 10746 7251 597 158 292 1017 477 1476 12348 1556 8594 6027 4439 3856 3548 3406 5124 6104 7173 5937 3717 5269 4396 4353 4280 4334 4470 4748 4830 ]
G [ 4665 6693 6705 3026 4412 4408 3862 4102 2600 3039 3977 4313 3998 3604 4627 2592 6452 8040 1043 157 3026 5918 1415 1691 17428 11050 10026 16526 14290 1312 8585 5511 2504 5292 5084 4250 7640 4974 4325 2855 3101 5046 4927 5073 4734 4142 4294 5185 4975 4953 ]
T [ 5116 5139 3721 3936 3210 5780 8378 5373 4226 4621 3800 3905 4502 5518 4674 7031 4041 3116 982 107 2124 460 6596 899 163 279 5831 501 1446 1643 1081 1898 6874 2079 5891 5010 3155 3523 3369 4377 4391 3413 4210 4149 4267 4549 4816 3905 3811 3826 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.02 0.03 -0.01 -0.00 0.06 -0.03 0.03 -0.04 -0.03 -0.03 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.01 ]
C [ 0.01 0.01 0.01 0.01 0.03 0.02 -0.01 0.08 0.12 -0.03 0.07 0.03 0.01 -0.01 -0.05 0.00 -0.02 -0.02 0.07 -0.02 0.03 0.02 0.01 0.00 0.00 ]
G [ 0.01 0.01 0.00 0.01 -0.01 0.02 0.04 -0.02 -0.01 0.06 0.04 -0.01 0.02 0.11 0.08 0.06 0.09 0.07 -0.02 0.07 0.02 -0.00 0.01 0.01 -0.00 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.02 -0.05 -0.02 -0.04 0.04 -0.03 -0.03 -0.05 0.01 -0.02 0.00 -0.01 -0.03 -0.01 0.02 -0.02 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 486

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 389

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages