Detailed information of deep learning profile BP000435.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000435.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR961SKY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 0.00 0.10 0.15 0.05 0.07 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 0.00 0.00 0.00 -0.00 -0.00 0.01 0.06 -0.00 0.16 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3971 3901 3980 4642 4470 4262 4253 4322 3773 4459 4399 3527 3699 3269 5094 6021 2256 6959 2113 1210 1735 1566 435 5402 309 204 1272 6362 661 2663 197 1232 3201 4229 6198 4603 5108 4490 4174 4091 4491 4289 5184 7256 5337 3598 3946 3894 4870 4967 ]
C [ 4906 4878 5024 4463 4375 4754 4930 4942 4865 3502 3342 4634 4957 7337 4174 4878 5237 2464 5233 8791 1217 14228 16642 10056 11104 17213 1984 1735 6307 3241 296 1515 7621 5684 2969 4471 3905 4239 4444 4121 3471 3128 4228 4134 4471 4414 3620 6064 6078 4623 ]
G [ 4576 4610 4459 4306 4242 4387 4324 4905 4011 5536 6339 5696 4846 3461 3696 3824 4460 5657 8589 1552 12016 1405 368 1085 313 163 725 6869 9592 1273 16759 13322 2303 4163 6070 4814 4399 4700 5008 5442 6358 7188 4505 3215 3844 3860 5700 4665 3486 4468 ]
T [ 4457 4521 4447 4499 4823 4507 4403 3741 5261 4413 3830 4053 4408 3843 4946 3187 5957 2830 1975 6357 2942 711 465 1367 6184 330 13929 2944 1350 10733 658 1841 4785 3834 2673 4022 4498 4481 4284 4256 3590 3305 3993 3305 4258 6038 4644 3287 3476 3852 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.00 -0.04 0.02 -0.07 -0.04 -0.04 0.05 -0.06 -0.03 -0.08 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.04 0.11 -0.02 0.12 0.15 0.09 0.12 0.16 0.02 -0.02 0.04 0.08 -0.01 -0.02 0.05 0.03 -0.00 0.01 0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.03 0.05 -0.02 0.11 -0.02 -0.03 0.00 -0.06 -0.02 -0.00 0.04 0.11 -0.03 0.16 0.11 -0.02 0.04 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.02 -0.05 -0.04 -0.06 0.04 -0.04 0.08 -0.02 -0.02 0.04 -0.02 -0.01 0.02 -0.02 -0.02 0.00 0.00 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 909

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 708

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 529

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 405

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 374

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 316

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 245

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages