Detailed information of deep learning profile BP000435.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000435.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR961SKY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.16 -0.00 0.06 0.01 -0.00 -0.00 0.00 0.00 0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.07 0.05 0.15 0.10 0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3852 3476 3287 4644 6038 4258 3305 3993 3305 3590 4256 4284 4481 4498 4022 2673 3834 4785 1841 658 10733 1350 2944 13929 330 6184 1367 465 711 2942 6357 1975 2830 5957 3187 4946 3843 4408 4053 3830 4413 5261 3741 4403 4507 4823 4499 4447 4521 4457 ]
C [ 4468 3486 4665 5700 3860 3844 3215 4505 7188 6358 5442 5008 4700 4399 4814 6070 4163 2303 13322 16759 1273 9592 6869 725 163 313 1085 368 1405 12016 1552 8589 5657 4460 3824 3696 3461 4846 5696 6339 5536 4011 4905 4324 4387 4242 4306 4459 4610 4576 ]
G [ 4623 6078 6064 3620 4414 4471 4134 4228 3128 3471 4121 4444 4239 3905 4471 2969 5684 7621 1515 296 3241 6307 1735 1984 17213 11104 10056 16642 14228 1217 8791 5233 2464 5237 4878 4174 7337 4957 4634 3342 3502 4865 4942 4930 4754 4375 4463 5024 4878 4906 ]
T [ 4967 4870 3894 3946 3598 5337 7256 5184 4289 4491 4091 4174 4490 5108 4603 6198 4229 3201 1232 197 2663 661 6362 1272 204 309 5402 435 1566 1735 1210 2113 6959 2256 6021 5094 3269 3699 3527 4399 4459 3773 4322 4253 4262 4470 4642 3980 3901 3971 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.00 0.00 -0.02 -0.02 0.02 -0.01 -0.02 0.04 -0.02 -0.02 0.08 -0.04 0.04 -0.06 -0.04 -0.05 -0.02 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.04 -0.02 0.11 0.16 -0.03 0.11 0.04 -0.00 -0.02 -0.06 0.00 -0.03 -0.02 0.11 -0.02 0.05 0.03 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.00 0.01 -0.00 0.03 0.05 -0.02 -0.01 0.08 0.04 -0.02 0.02 0.16 0.12 0.09 0.15 0.12 -0.02 0.11 0.04 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.08 -0.03 -0.06 0.05 -0.04 -0.04 -0.07 0.02 -0.04 0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 909

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 708

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 529

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 405

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 374

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 316

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 245

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages