Detailed information of deep learning profile BP000432.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000432.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR957UPE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.13 0.19 0.06 0.08 0.20 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.11 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4610 4538 4616 5443 5274 4897 4747 4995 4209 5175 5146 3997 4347 3679 6108 7249 2460 8427 2355 1226 1823 1692 229 6672 230 195 1487 7703 735 3020 222 1557 3733 4769 7257 5299 5839 5108 4780 4651 5221 5060 5967 8111 6271 4304 4718 4700 5630 5779 ]
C [ 5206 5291 5464 4580 4588 5312 5477 5447 5356 3493 3238 5144 5392 8268 4383 5127 5833 2184 5797 9611 880 16823 19458 11203 12102 19516 1984 1768 7280 3096 269 1618 8496 6399 3275 5071 4244 4732 4921 4557 3820 3458 4649 4506 4745 4713 3946 6343 6596 5021 ]
G [ 5078 5078 4774 4730 4548 4568 4689 5457 4195 6178 7315 6473 5234 3773 3891 4178 4729 6499 9972 1320 14202 1041 103 863 208 76 623 7322 10550 1242 18875 14814 2425 4389 6584 5200 4724 5154 5485 5980 6816 7679 4989 3572 4151 4282 6057 5103 3808 4790 ]
T [ 5227 5214 5267 5368 5711 5344 5208 4222 6361 5275 4422 4507 5148 4401 5739 3567 7099 3011 1997 7964 3216 565 331 1383 7581 334 16027 3328 1556 12763 755 2132 5467 4564 3005 4551 5314 5127 4935 4933 4264 3924 4516 3932 4954 6822 5400 3975 4087 4531 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.03 -0.01 -0.07 -0.03 0.01 -0.05 0.04 -0.09 -0.05 -0.03 0.06 -0.06 -0.03 -0.08 -0.03 -0.02 -0.00 0.03 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.05 0.01 0.03 0.04 -0.00 0.06 0.16 -0.02 0.15 0.20 0.12 0.15 0.20 0.04 -0.01 0.07 0.09 -0.03 -0.03 0.07 0.05 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.02 0.02 0.04 0.06 0.08 -0.01 0.15 -0.02 -0.03 0.01 -0.06 -0.02 0.00 0.07 0.13 -0.02 0.20 0.13 -0.01 0.05 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.03 -0.01 -0.06 -0.05 -0.07 0.06 -0.05 0.10 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1547

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1105

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 245

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 191

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages