Detailed information of deep learning profile BP000431.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in thyroid gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000431.1
Cell line/tissue: thyroid gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR955BIB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.15 -0.00 0.05 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.15 0.06 0.04 0.13 0.09 -0.00 0.04 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4296 3901 3676 5260 6547 4736 3748 4375 3629 4127 4582 4909 5001 5048 4441 2921 4356 5347 1975 578 12556 1302 3106 15425 305 7463 1314 314 449 2840 7791 1850 2742 6818 3354 5650 4163 4903 4396 4018 4957 6078 4021 4873 5157 5441 5054 4936 5007 4942 ]
C [ 4475 3417 4775 5718 4043 3646 3228 4570 7346 6349 5827 5156 4859 4319 4842 5855 3890 2251 14216 18077 931 10097 7228 541 83 158 854 110 604 13767 1022 9643 6157 4593 3966 3514 3382 5095 6195 7192 5866 3948 5102 4388 4288 4287 4391 4518 4640 4707 ]
G [ 4732 6317 6106 3517 4370 4514 4195 4345 3107 3431 4105 4387 4294 3869 4568 2985 6150 7812 1431 187 2648 6955 1612 1765 18461 11176 10059 18330 16399 630 9095 5660 1997 5561 4968 4072 7897 5012 4554 2891 3112 4946 5059 5131 4805 4345 4366 5116 5041 4896 ]
T [ 5504 5372 4450 4512 4047 6111 7836 5717 4925 5100 4493 4555 4853 5771 5156 7246 4611 3597 1385 165 2872 653 7061 1276 158 210 6780 253 1555 1770 1099 1854 8111 2035 6719 5771 3565 3997 3862 4906 5072 4035 4825 4615 4757 4934 5196 4437 4319 4462 ]

Hypothetical CWM

   
A [ 0.01 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.08 -0.04 0.04 -0.05 -0.05 -0.04 -0.01 0.02 -0.01 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.04 0.03 -0.01 0.10 0.15 -0.02 0.10 0.05 -0.00 -0.01 -0.05 0.01 -0.02 -0.02 0.11 -0.02 0.06 0.04 0.02 0.01 0.00 0.00 0.02 ]
G [ 0.01 0.01 0.00 0.03 0.05 -0.02 -0.01 0.07 0.04 -0.02 0.02 0.15 0.11 0.08 0.14 0.10 -0.02 0.10 0.04 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.05 0.05 -0.03 -0.03 -0.06 0.02 -0.03 0.01 -0.02 -0.05 -0.02 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2730

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 250

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages