Detailed information of deep learning profile BP000431.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in thyroid gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000431.1
Cell line/tissue: thyroid gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR955BIB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.04 -0.00 0.09 0.13 0.04 0.06 0.15 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.15 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4462 4319 4437 5196 4934 4757 4615 4825 4035 5072 4906 3862 3997 3565 5771 6719 2035 8111 1854 1099 1770 1555 253 6780 210 158 1276 7061 653 2872 165 1385 3597 4611 7246 5156 5771 4853 4555 4493 5100 4925 5717 7836 6111 4047 4512 4450 5372 5504 ]
C [ 4896 5041 5116 4366 4345 4805 5131 5059 4946 3112 2891 4554 5012 7897 4072 4968 5561 1997 5660 9095 630 16399 18330 10059 11176 18461 1765 1612 6955 2648 187 1431 7812 6150 2985 4568 3869 4294 4387 4105 3431 3107 4345 4195 4514 4370 3517 6106 6317 4732 ]
G [ 4707 4640 4518 4391 4287 4288 4388 5102 3948 5866 7192 6195 5095 3382 3514 3966 4593 6157 9643 1022 13767 604 110 854 158 83 541 7228 10097 931 18077 14216 2251 3890 5855 4842 4319 4859 5156 5827 6349 7346 4570 3228 3646 4043 5718 4775 3417 4475 ]
T [ 4942 5007 4936 5054 5441 5157 4873 4021 6078 4957 4018 4396 4903 4163 5650 3354 6818 2742 1850 7791 2840 449 314 1314 7463 305 15425 3106 1302 12556 578 1975 5347 4356 2921 4441 5048 5001 4909 4582 4127 3629 4375 3748 4736 6547 5260 3676 3901 4296 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.02 -0.05 -0.02 0.01 -0.03 0.02 -0.06 -0.03 -0.03 0.05 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.04 0.10 -0.02 0.10 0.14 0.08 0.11 0.15 0.02 -0.02 0.04 0.07 -0.01 -0.02 0.05 0.03 0.00 0.01 0.01 ]
G [ 0.02 0.00 0.00 0.01 0.02 0.04 0.06 -0.02 0.11 -0.02 -0.02 0.01 -0.05 -0.01 -0.00 0.05 0.10 -0.02 0.15 0.10 -0.01 0.03 0.04 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.01 0.02 -0.01 -0.04 -0.05 -0.05 0.04 -0.04 0.08 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2730

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 250

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages