Detailed information of deep learning profile BP000430.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000430.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR954MUZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.17 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.05 0.00 0.02 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.16 0.08 0.05 0.12 0.07 0.00 0.03 0.00 -0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 3835 3413 3177 4560 6310 4285 3072 4094 2915 3675 4221 4475 4195 4135 3601 2428 3565 5117 1489 669 10517 1372 2472 13193 184 3940 1969 770 1840 3691 5324 2942 3438 5127 3597 4555 3890 4400 3936 4055 4437 4575 4077 4299 4434 4366 4262 4390 4417 4371 ]
C [ 3703 2740 4009 5283 3417 3288 2625 3886 7448 5872 5083 4382 4207 3786 4768 5616 3951 1909 13114 15348 1086 8984 6373 311 61 143 795 750 2013 8463 2672 6307 4460 3677 3347 3385 3480 4038 4465 4844 4349 3720 3978 3791 3860 3908 3954 3976 3920 4001 ]
G [ 3941 5484 5674 2694 3495 3758 3282 3493 2292 2552 3363 3704 3425 3194 3654 2195 5058 6303 981 220 1638 5525 1053 1783 16059 11852 9640 13680 10675 1904 6371 4177 2807 4494 4305 3908 5392 4117 4286 3341 3596 4092 4124 4183 4064 3864 3946 4002 4047 3960 ]
T [ 4963 4805 3582 3905 3220 5111 7463 4969 3787 4343 3775 3881 4615 5327 4419 6203 3868 3113 858 205 3201 561 6544 1155 138 507 4038 1242 1914 2384 2075 3016 5737 3144 5193 4594 3680 3887 3755 4202 4060 4055 4263 4169 4084 4304 4280 4074 4058 4110 ]

Hypothetical CWM

   
A [ 0.02 0.00 -0.01 0.01 -0.01 -0.01 0.00 0.00 0.01 0.01 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.09 -0.06 0.02 -0.05 -0.05 -0.04 -0.01 0.01 -0.01 -0.01 0.02 -0.01 ]
C [ -0.00 -0.01 -0.03 0.00 0.05 0.04 0.03 0.02 0.01 0.00 0.02 0.05 0.03 -0.02 0.12 0.17 -0.02 0.10 0.04 -0.02 -0.04 -0.08 -0.01 -0.03 -0.03 0.08 -0.00 0.04 0.02 0.01 0.00 ]
G [ 0.00 0.00 -0.01 -0.01 -0.03 -0.01 0.00 0.00 0.01 0.00 0.01 -0.01 0.04 0.05 -0.04 -0.03 0.06 0.04 -0.04 0.01 0.17 0.12 0.09 0.14 0.09 -0.01 0.07 0.02 -0.01 0.01 0.01 ]
T [ -0.01 0.01 0.04 0.01 -0.00 0.00 -0.00 0.00 0.01 0.01 0.01 0.02 -0.00 -0.01 -0.04 -0.08 -0.03 -0.06 0.05 -0.04 -0.04 -0.06 0.00 -0.04 -0.00 -0.02 -0.04 -0.01 0.02 -0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1096

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 263

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 190

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 148

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages